| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 123 [0] | [0] 121 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 113 (1.030) | 70/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 132 total aligned reads displayed.
TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATC > NC_000913/325411‑325459 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA < 1:2545903/50‑1TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA < 1:7913488/50‑1TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA < 1:4007464/50‑1 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:5304559/49‑1 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:4050487/1‑48 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:5863666/1‑48 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:8618169/1‑48 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATA < 1:3595348/49‑1 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATA < 1:3034159/49‑1 TCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGT > 1:5747555/1‑50 TCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAG < 1:6054403/49‑1 CTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC > 1:1837634/1‑50 CTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGT < 1:4479980/49‑1 ACCAGAAAATTCACGGCATCGGCTAGGGGGATACCGGCATCGATAGTCTG > 1:2963569/1‑50 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGT < 1:4999745/50‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGT < 1:724000/50‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT < 1:3783032/48‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA < 1:6872345/50‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA < 1:3902882/50‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA < 1:880608/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:273419/1‑50 AGAAAATTCACGGCATCGGCTAGGGCGATACCGGCATCGATAGTCTGTAT > 1:7053256/1‑50 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:5811096/1‑49 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:5554983/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:2619134/1‑48 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:1620744/1‑48 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:1130664/1‑48 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG < 1:7622687/50‑1 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG < 1:3664845/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:7017828/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGCCTGTATCAG > 1:38751/1‑49 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:8404603/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG > 1:2548034/1‑49 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG > 1:439647/1‑49 TCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT > 1:5643295/1‑50 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:3603963/49‑1 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:8096335/49‑1 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:3912222/49‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT < 1:6917011/50‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT > 1:2248919/1‑50 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT > 1:5063800/1‑50 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT < 1:830455/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:146345/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:2404380/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:4246301/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:6951153/1‑50 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG < 1:3617536/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG < 1:4882672/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:3960435/1‑50 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG < 1:5519419/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:3392121/1‑50 TCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT < 1:3183829/50‑1 TCGGCTAGGGCGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:2182690/1‑50 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA < 1:4924242/50‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA < 1:6972220/50‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:8119780/49‑1 GCTAGGGTGATACCGGCAGCGATAGTCTGTATCAGGAATGTTCGGGTTAA < 1:2557825/50‑1 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:6046537/1‑50 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA < 1:3816203/50‑1 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:733337/1‑49 AGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA > 1:2288483/1‑50 AGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA > 1:1519521/1‑50 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:907894/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:5033719/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:106849/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:1029669/1‑50 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA < 1:6886770/49‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT < 1:7449659/48‑1 GGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATC < 1:6338864/50‑1 GGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATC < 1:6752715/50‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:92140/50‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:2134054/50‑1 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG > 1:1992668/1‑50 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:3308910/50‑1 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA < 1:1042551/50‑1 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC < 1:8527225/49‑1 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA < 1:8050135/50‑1 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA > 1:4600225/1‑49 ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA > 1:6128360/1‑49 ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA > 1:1228661/1‑49 ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA > 1:7965400/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA < 1:3418901/50‑1 CCGGCATCGATAGTCTGTATCAGGAATGCTCGGGTTAAATATCAGCAAA > 1:8228285/1‑49 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:3961714/50‑1 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG > 1:7679673/1‑50 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC < 1:2651813/50‑1 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC > 1:5975903/1‑50 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC < 1:5321754/50‑1 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC < 1:8558074/50‑1 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:1397527/1‑50 ATCGATAGTCTGTATCAGG‑ATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:7309244/1‑50 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:4076327/1‑49 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA > 1:6771604/1‑50 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA > 1:7994538/1‑50 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA < 1:5348701/50‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGC < 1:7013281/49‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:4294338/1‑50 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT < 1:3372807/50‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT < 1:6226013/50‑1 TAGCCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:4863140/1‑49 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATC > NC_000913/325411‑325459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |