Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,555,491 Δ41,523 bp [yjiC]–lgoD 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4555491 4597013 41523 119 [0] [0] 117 [yjiC]–lgoD [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 45554900 (0.000)112 (1.000) 62/96 0.0 100% coding (831/831 nt) yjiC uncharacterized protein YjiC
?NC_000913 4597014 = 0 (0.000)intergenic (+2/+136) lgoD/opgB L‑galactonate oxidoreductase/phosphoglycerol transferase I

Only 100 of 119 total aligned reads displayed.

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4597014‑4597062
                                                                                                  
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA                                                  <  1:353774/50‑1
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   <  1:3535769/49‑1
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   <  1:7915173/49‑1
  TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA                                                 <  1:7721029/49‑1
   AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG                                               >  1:5196872/1‑50
   AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG                                               >  1:81988/1‑50
   AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG                                               >  1:1699441/1‑50
    GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              <  1:6340821/50‑1
    GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:4268988/1‑50
    GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG                                               <  1:2590217/49‑1
     CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:3268983/1‑49
      TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:1860182/1‑48
      TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:42442/1‑48
      TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:8558783/1‑48
          TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                         >  1:6719187/1‑49
          TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                         >  1:2548828/1‑49
           GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       >  1:6069989/1‑50
           GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       >  1:1695186/1‑50
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       <  1:6387512/49‑1
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       <  1:4542338/49‑1
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                         <  1:3846656/47‑1
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                         <  1:1210295/47‑1
              TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA                                    <  1:4275341/50‑1
              TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA                                    <  1:8387412/50‑1
              TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT                                     >  1:734802/1‑49
               AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA                                    >  1:3901627/1‑49
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA                                  <  1:2896617/50‑1
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA                                  <  1:2884209/50‑1
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA                                  <  1:2599601/50‑1
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA                                  <  1:4001621/50‑1
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAA                                   <  1:4182156/49‑1
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA                                    >  1:4239192/1‑48
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA                                    >  1:1857459/1‑48
                ACCTGAATGTTAGTACTCATTCTTCCTAGTAGTAAGGCGAGATTATTA                                    >  1:6209396/1‑48
                 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG                                 >  1:42895/1‑50
                  CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT                                <  1:7154936/50‑1
                  CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT                                <  1:5842425/50‑1
                   TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               >  1:7627662/1‑50
                   TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               >  1:2947680/1‑50
                   TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               >  1:2510187/1‑50
                   TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               >  1:1845609/1‑50
                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             <  1:2266005/50‑1
                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             >  1:67037/1‑50
                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               <  1:4149167/48‑1
                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               <  1:7809177/48‑1
                      ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             >  1:4918919/1‑49
                       TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA                           >  1:7629505/1‑50
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         <  1:5461338/50‑1
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         <  1:6610638/50‑1
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         >  1:1149184/1‑50
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         <  1:2605421/50‑1
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         >  1:2777439/1‑50
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT                          <  1:8419324/49‑1
                          TAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         >  1:6325768/1‑49
                          TAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         >  1:6168900/1‑49
                           AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC                        <  1:4139554/49‑1
                            GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG                      >  1:7720120/1‑50
                            GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA                       <  1:3816262/49‑1
                            GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA                       <  1:7482852/49‑1
                             TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC                     >  1:6016848/1‑50
                             TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC                     <  1:3336158/50‑1
                             TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC                     >  1:3141827/1‑50
                             TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC                     <  1:5524174/50‑1
                             TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC                     <  1:5337484/50‑1
                               CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATTCAGCGT                   <  1:6929639/50‑1
                               CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT                   <  1:1727330/50‑1
                               CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG                    <  1:3717502/49‑1
                                 CATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC                 >  1:5536634/1‑50
                                 CATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC                 >  1:5510993/1‑50
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG                >  1:7054482/1‑50
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG                >  1:6129452/1‑50
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG                >  1:3755240/1‑50
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC                 <  1:8569157/49‑1
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC                 <  1:1174753/49‑1
                                   TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG               >  1:1355750/1‑50
                                    TCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG              >  1:3603271/1‑50
                                     CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG              >  1:5030048/1‑49
                                      TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG             >  1:7455673/1‑49
                                       TCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG             >  1:8230494/1‑48
                                       TCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG             >  1:6714243/1‑48
                                        CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG          >  1:4151334/1‑50
                                         CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT         <  1:859939/50‑1
                                         CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT         >  1:1091200/1‑50
                                         CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG          <  1:1705616/49‑1
                                         CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG          <  1:7056923/49‑1
                                          TGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTG        >  1:5773024/1‑50
                                           GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT       >  1:8591990/1‑50
                                           GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT       >  1:1777267/1‑50
                                            GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT      >  1:8157965/1‑50
                                             TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG     >  1:6522980/1‑50
                                             TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG     <  1:3419572/50‑1
                                             TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG     <  1:1337876/50‑1
                                             TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG     >  1:3139233/1‑50
                                             TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG     >  1:2061856/1‑50
                                               GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG   <  1:6067049/50‑1
                                               GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG   >  1:609372/1‑50
                                               GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG    <  1:6778829/49‑1
                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  <  1:8089663/50‑1
                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  <  1:781288/50‑1
                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  1:7197296/1‑50
                                                                                                  
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4597014‑4597062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.