| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 115 [0] | [0] 117 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 100 (0.980) | 58/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 115 total aligned reads displayed.
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:3532385‑M1/1‑50 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:1390627‑M1/1‑50 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:6933098‑M1/1‑50 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:720857‑M1/50‑2 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctc < 1:1520874‑M1/50‑4 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:8444122‑M1/1‑47 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:5829413‑M1/1‑47 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:7348026‑M1/1‑47 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:6200043‑M1/49‑3 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca > 1:2529666‑M1/1‑46 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca < 1:7686422‑M1/50‑5 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 1:326419‑M1/1‑45 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt < 1:7887923‑M1/50‑7 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2182572‑M1/1‑44 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 1:4268909‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:3331235‑M1/1‑43 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:7008635‑M1/1‑43 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta < 1:5516212‑M1/50‑9 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAATGGAAATCTTCctcatttat > 1:5165032‑M1/1‑41 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:526047‑M1/1‑41 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:5222192‑M1/1‑41 (MQ=255) ttGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg > 1:5196780‑M1/1‑40 (MQ=255) tGCCCAGGTGTGTCTGAGGTCATGGAAACGGACATCTTCctcatttatgc > 1:7871400‑M1/1‑39 (MQ=255) tGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc > 1:6399537‑M1/1‑39 (MQ=255) tGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc > 1:952462‑M1/1‑39 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:4881331‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:4585105‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:6821508‑M1/48‑11 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:5989959‑M1/48‑11 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:4948251‑M1/48‑11 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:1371892‑M1/48‑11 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:1252828‑M1/1‑36 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:360572‑M1/1‑36 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:8274057‑M1/1‑36 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:8058069‑M1/50‑15 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:2457206‑M1/1‑36 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt < 1:5838668‑M1/50‑16 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt > 1:7202945‑M1/1‑35 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:1960344‑M1/1‑34 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct < 1:3094835‑M1/50‑18 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:3069391‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:184720‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:1808749‑M1/50‑19 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:5177033‑M1/50‑20 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:5427379‑M1/1‑31 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 1:7883909‑M1/50‑22 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 1:1636090‑M1/50‑22 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg < 1:7866453‑M1/50‑24 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:2863074‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:6270235‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:658275‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:6415977‑M1/49‑23 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:7547696‑M1/49‑23 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:4170091‑M1/1‑25 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:3469402‑M1/1‑25 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:5088854‑M1/1‑25 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:7555218‑M1/1‑25 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:5142940‑M1/1‑24 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:7554149‑M1/1‑24 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:3273512‑M1/1‑24 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttc < 1:1237073‑M1/50‑28 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttc < 1:3582118‑M1/50‑28 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:1800794‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 1:136392‑M1/48‑26 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt < 1:8473311‑M1/47‑25 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc > 1:2462217‑M1/1‑22 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg < 1:164533‑M1/50‑30 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg > 1:2182484‑M1/1‑21 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc < 1:169930‑M1/50‑31 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc < 1:8612267‑M1/50‑31 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 1:6834077‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:6803168‑M1/49‑32 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:8018706‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:1694777‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:7619402‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:7167667‑M1/50‑34 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg > 1:2801436‑M1/1‑16 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:2210558‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:7138889‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc < 1:2550678‑M1/50‑36 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 1:2334735‑M1/1‑14 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc > 1:2233549‑M1/1‑13 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:6933646‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:5870048‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:7488226‑M1/1‑10 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:1447369‑M1/1‑10 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:1723413‑M1/1‑10 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:1674126‑M1/1‑6 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:6765430‑M1/1‑6 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:3618860‑M1/1‑5 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:6520528‑M1/1‑5 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 1:4186258‑M1/1‑4 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:4460350‑M1/1‑3 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:1728483‑M1/1‑3 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:8005421‑M1/1‑3 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:8588269‑M1/1‑2 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:6924365‑M1/1‑2 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:7442159‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:6293007‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:3229184‑M1/47‑47 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |