| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 132 [0] | [0] 134 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 129 (1.150) | 68/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 132 total aligned reads displayed.
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTAC > NC_000913/1627468‑1627566 | cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:1637205‑M1/50‑2 (MQ=255) cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:2103923‑M1/50‑2 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:7246294‑M1/1‑48 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc < 1:3155037‑M1/50‑4 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:772839‑M1/1‑46 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgc < 1:4574537‑M1/50‑6 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:6677464‑M1/1‑45 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgca < 1:4240860‑M1/50‑7 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag < 1:4766116‑M1/50‑8 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:3897783‑M1/1‑43 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 1:5365763‑M1/1‑42 (MQ=255) gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:1208158‑M1/1‑41 (MQ=255) gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:884685‑M1/1‑41 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:1354006‑M1/1‑40 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg < 1:308106‑M1/49‑10 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:6858231‑M1/1‑39 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccca < 1:7530165‑M1/50‑14 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccca < 1:7652704‑M1/50‑14 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccc < 1:6889033‑M1/49‑13 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccc < 1:7586717‑M1/49‑13 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccc < 1:4958501‑M1/49‑13 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTAAGAagcgcagtgccc < 1:7212665‑M1/49‑13 (MQ=255) gTTATTGACACACAAAAGCGTTGAGGAACAGTGTGAagcgcagtgcccag > 1:1078470‑M1/1‑36 (MQ=255) gTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag > 1:890504‑M1/1‑36 (MQ=255) gTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag > 1:7791942‑M1/1‑36 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:2442207‑M1/1‑35 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:5688672‑M1/1‑35 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:5957795‑M1/1‑35 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag < 1:7759623‑M1/49‑15 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag < 1:7788355‑M1/49‑15 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:6400161‑M1/1‑34 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:1712727‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcc < 1:8592215‑M1/49‑17 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat > 1:4742671‑M1/1‑32 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat < 1:6559305‑M1/50‑19 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat > 1:6146769‑M1/1‑32 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:5555454‑M1/50‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:4575202‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:4449067‑M1/50‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:4977488‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:2154676‑M1/50‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcc < 1:6431497‑M1/49‑21 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccg < 1:3000223‑M1/50‑23 (MQ=255) acacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 1:1030742‑M1/1‑27 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 1:8590774‑M1/1‑26 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac > 1:3830631‑M1/1‑24 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac < 1:1445877‑M1/50‑27 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact > 1:5553892‑M1/1‑23 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact < 1:2711210‑M1/50‑28 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact > 1:4548332‑M1/1‑23 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg < 1:1786086‑M1/50‑29 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg < 1:7035865‑M1/50‑29 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg > 1:8364396‑M1/1‑22 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg > 1:3335319‑M1/1‑22 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc < 1:4167622‑M1/50‑30 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc > 1:562529‑M1/1‑21 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:1104009‑M1/50‑31 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct > 1:3878454‑M1/1‑20 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg < 1:972484‑M1/50‑32 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg < 1:7698123‑M1/50‑32 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:2260827‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:2824292‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct < 1:5168963‑M1/50‑34 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:6387257‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:3861171‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:4196023‑M1/1‑17 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt > 1:665723‑M1/1‑16 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt < 1:390375‑M1/50‑35 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1236243‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:3138554‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:7276154‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1398360‑M1/1‑15 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:8295156‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:2481538‑M1/1‑14 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca > 1:6002263‑M1/1‑13 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc < 1:4914353‑M1/50‑40 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc > 1:3556445‑M1/1‑10 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc > 1:5255630‑M1/1‑10 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc > 1:2918051‑M1/1‑10 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaa < 1:82537‑M1/50‑42 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa > 1:4877305‑M1/1‑8 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa < 1:6308549‑M1/50‑43 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:4178458‑M1/1‑7 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:1317857‑M1/50‑45 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:1469172‑M1/50‑45 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:7909891‑M1/50‑45 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc > 1:734045‑M1/1‑5 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc > 1:1789099‑M1/1‑5 (MQ=255) gagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:2543595‑M1/1‑4 (MQ=255) gagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:4168152‑M1/1‑4 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:3369637‑M1/49‑47 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:7878710‑M1/49‑47 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:7192893‑M1/49‑47 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:7962222‑M1/50‑49 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:1811796‑M1/1‑2 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:8465043‑M1/1‑2 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:1689874‑M1/1‑2 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:6279401‑M1/1‑2 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag > 1:3475847‑M1/1‑1 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag < 1:5215303‑M1/50‑50 (MQ=255) | GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTAC > NC_000913/1627468‑1627566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |