| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 90 [1] | [0] 88 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 1 (0.010) | 83 (0.740) | 50/96 | 0.1 | 99.4% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20516‑20611 | gggtgcgttgaagatgtgcgagcacctgtaaagtggcggggatcactct < 1:2513959‑M2/1‑1 (MQ=255)gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactct < 1:8097153‑M2/1‑1 (MQ=255)gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTa < 1:7256301‑M2/2‑1 (MQ=255) ggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTAc < 1:220410‑M2/3‑1 (MQ=255) gtgcgttgaagatatgcgagcacctgtaaagtggcgggggtcactcTTcc > 1:4412421‑M2/47‑50 (MQ=255) gcgttgaagatatgcgagcacctgtaaagtggcggggggcactcttcccc > 1:1587732‑M2/45‑48 (MQ=255) gcgttgaagatatgcgagcacctgtaaagtggcggggaacactcTACCt > 1:3159184‑M2/45‑49 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcgggggtcactcTACCCCa > 1:2521046‑M2/44‑50 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCa < 1:7798116‑M2/7‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:53082‑M2/9‑1 (MQ=255) tgaagatatgcgagcacctgtaaagtggcgggggtcactcTACCtcaaat > 1:6153458‑M2/41‑48 (MQ=255) gaagatatgcgagcacctgtaaagtggcgggggttactcTTCCCCaattt > 1:954011‑M2/40‑48 (MQ=255) gaagatatgcgagcacctgtaaagtggcgggggtcactcTACCCCCAtgt > 1:5688165‑M2/40‑50 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:2006577‑M2/10‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:3120043‑M2/10‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:2811129‑M2/10‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:2517636‑M2/10‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:2741451‑M2/10‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcgggggtcactcTACCTCCAtgtg > 1:3465402‑M2/39‑50 (MQ=255) aagatatgcgagcacctgtaaagtggcgggggtcactcTACCTCAAagtg > 1:6349353‑M2/39‑50 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgtg < 1:764138‑M2/12‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgtg < 1:5793991‑M2/12‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgt < 1:2772067‑M2/11‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgt < 1:2460325‑M2/11‑1 (MQ=255) agatatgcgagcacctgtaaagtggcgggggttactcCACCTCAAagtg > 1:4074892‑M2/38‑49 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:3072062‑M2/13‑1 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:7860579‑M2/13‑1 (MQ=255) atatgcgagcacctgtaaagtggcgggggtcactcTTCCTCAATTTGTAt > 1:1682470‑M2/36‑50 (MQ=255) tatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATc < 1:6749545‑M2/16‑1 (MQ=255) tatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATc < 1:3601923‑M2/16‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:1757715‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:3484330‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATca < 1:3199443‑M2/17‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcaca < 1:453805‑M2/19‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcaca < 1:3096223‑M2/19‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACaa < 1:3567808‑M2/20‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACaa < 1:1695525‑M2/20‑1 (MQ=255) gagcacctgtaaagtggcgggggtcactcTACCTCAAAGTGTATCaaaa > 1:2870217‑M2/30‑49 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 1:5463182‑M2/21‑1 (MQ=255) agcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAata < 1:1583293‑M2/22‑1 (MQ=255) agcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAata < 1:624842‑M2/22‑1 (MQ=255) agcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAata < 1:5125766‑M2/22‑1 (MQ=255) gcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAatat < 1:5630718‑M2/23‑1 (MQ=255) acctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATcc < 1:8149638‑M2/25‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:6801763‑M2/26‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:5146909‑M2/26‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:2371751‑M2/26‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:7975792‑M2/26‑1 (MQ=255) ctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCat < 1:2912981‑M2/27‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCatat < 1:3088844‑M2/29‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATAtt < 1:5029901‑M2/30‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt > 1:816281‑M2/19‑50 (MQ=255) agtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCtt < 1:5713178‑M2/33‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg < 1:7974009‑M2/35‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg < 1:7918197‑M2/35‑1 (MQ=255) ggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt > 1:6710446‑M2/15‑50 (MQ=255) ggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt > 1:300408‑M2/15‑50 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgtg < 1:7138740‑M2/37‑1 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgtg > 1:4576155‑M2/14‑50 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgtg > 1:3506213‑M2/14‑50 (MQ=255) cggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg > 1:1245380‑M2/13‑50 (MQ=255) cggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg > 1:1513855‑M2/13‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg < 1:3722655‑M2/39‑1 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:791904‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg < 1:6204600‑M2/39‑1 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:7622006‑M2/12‑50 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg < 1:8543225‑M2/40‑1 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg < 1:3031192‑M2/40‑1 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg < 1:679369‑M2/40‑1 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:7624566‑M2/11‑50 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggggg < 1:3975457‑M2/41‑1 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggggg < 1:2893681‑M2/41‑1 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:5648100‑M2/9‑48 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 1:7133795‑M2/42‑1 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg < 1:1337061‑M2/43‑1 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg > 1:8323294‑M2/8‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt < 1:7286112‑M2/44‑1 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:1504516‑M2/7‑50 (MQ=255) cactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 1:7793062‑M2/6‑50 (MQ=255) cactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 1:1201614‑M2/6‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc < 1:5333046‑M2/45‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:6693012‑M2/5‑50 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc < 1:5560423‑M2/45‑1 (MQ=255) cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:3930939‑M2/2‑48 (MQ=255) cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:1982546‑M2/2‑48 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTgg < 1:5453145/48‑1 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTgg < 1:8399453/48‑1 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:1556351/1‑47 (MQ=255) | CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20516‑20611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |