| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 120 [0] | [0] 131 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 95 (1.110) +CAGATAATTCAA |
52/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 131 total aligned reads displayed.
GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 | ctcctgattttagtaatctcttgatgctaagaactatcagataattcaaa < 1:1348726‑M2/1‑1 (MQ=255) tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:842487‑M2/49‑50 (MQ=255) tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:3663777‑M2/49‑50 (MQ=255) tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:3773162‑M2/49‑50 (MQ=255) tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:4091076‑M2/49‑50 (MQ=255) tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:6034559‑M2/49‑50 (MQ=255) cctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc > 1:5489199‑M2/48‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAg < 1:942220‑M2/2‑1 (MQ=255) tgattttagtaatctcttgatgctaagaactatcagataattcaaAGCGt > 1:1648473‑M2/46‑50 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGt < 1:2642448‑M2/5‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg > 1:219346‑M2/44‑50 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg > 1:1693897‑M2/44‑50 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc < 1:4186538‑M2/8‑1 (MQ=255) tttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt > 1:3817359‑M2/42‑50 (MQ=255) tttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt > 1:6739218‑M2/42‑50 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:2253633‑M2/9‑1 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:2866659‑M2/9‑1 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:8309373‑M2/9‑1 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 1:3576733‑M2/40‑50 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg < 1:6631273‑M2/10‑1 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt < 1:5492572‑M2/11‑1 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGCGGCtgt > 1:1951757‑M2/39‑49 (MQ=255) aatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 1:3568124‑M2/36‑49 (MQ=255) aatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 1:2726478‑M2/36‑49 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 1:6531035‑M2/15‑1 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:7820497‑M2/34‑49 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:2391767‑M2/34‑49 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:7185096‑M2/32‑50 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:310868‑M2/32‑50 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:106269‑M2/32‑50 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:5873955‑M2/31‑49 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:1298260‑M2/31‑49 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:2492283‑M2/31‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATa < 1:4776819‑M2/18‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 1:8565262‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 1:7394765‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:7079593‑M2/19‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg < 1:3709030‑M2/20‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:5384132‑M2/28‑50 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 1:8493984‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt < 1:8088238‑M2/23‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt < 1:123093‑M2/23‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:7239597‑M2/27‑49 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:4928750‑M2/27‑49 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt < 1:5502268‑M2/23‑1 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa < 1:126674‑M2/25‑1 (MQ=255) tgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTa < 1:2963155‑M2/25‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:1142298‑M2/26‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 1:8327397‑M2/27‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 1:6263634‑M2/27‑1 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 1:4565026‑M2/22‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt < 1:3524700‑M2/30‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:8225082‑M2/28‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:5340831‑M2/31‑1 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:7067639‑M2/19‑50 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttttt < 1:6256332‑M2/33‑1 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:4607612‑M2/18‑49 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:1477270‑M2/18‑49 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 1:1932395‑M2/34‑1 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa > 1:1032901‑M2/17‑50 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 1:4189554‑M2/34‑1 (MQ=255) ctatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTa < 1:441969‑M2/34‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:1875897‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:4255264‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg < 1:3670452‑M2/36‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt < 1:2272118‑M2/37‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:6820418‑M2/14‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:1465572‑M2/14‑50 (MQ=255) cagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:4923632‑M2/13‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:2926450‑M2/12‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:212494‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:3448545‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:8456462‑M2/12‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGa < 1:6671296‑M2/39‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa < 1:2548454‑M2/40‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa < 1:4887072‑M2/40‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:4675631‑M2/10‑50 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:5944441‑M2/41‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:4161110‑M2/41‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:230325‑M2/9‑49 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:2834553‑M2/9‑49 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:4949398‑M2/9‑49 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:7176592‑M2/9‑49 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:6745488‑M2/9‑49 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:2924141‑M2/42‑1 (MQ=255) aattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:217624‑M2/8‑48 (MQ=255) aattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:5119120‑M2/8‑48 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag < 1:6357062‑M2/44‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:3457291‑M2/43‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:7543913‑M2/43‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:872952‑M2/43‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:8184788‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:832315‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag > 1:1929665‑M2/6‑49 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag > 1:2075307‑M2/6‑49 (MQ=255) tcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:10913‑M2/5‑50 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa < 1:6836937‑M2/46‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:5978751‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:4733144‑M2/48‑1 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa < 1:7613910‑M2/49‑1 (MQ=255) | GATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223044‑1223142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |