| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 121 [0] | [0] 118 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 118 (1.060) | 66/96 | 0.0 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
Only 100 of 118 total aligned reads displayed.
TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625631‑3625726 | gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt < 1:2998704‑M2/1‑1 (MQ=255)gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt < 1:4188352‑M2/1‑1 (MQ=255) ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc < 1:7100372‑M2/3‑1 (MQ=255) ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc < 1:7580835‑M2/3‑1 (MQ=255) ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc < 1:3433724‑M2/3‑1 (MQ=255) ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc > 1:7985852‑M2/48‑50 (MQ=255) ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc > 1:1767879‑M2/48‑50 (MQ=255) ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc < 1:1807750‑M2/3‑1 (MQ=255) gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg < 1:4075059‑M2/4‑1 (MQ=255) gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg > 1:5434624‑M2/47‑50 (MQ=255) gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg > 1:5771403‑M2/47‑50 (MQ=255) gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg < 1:8469688‑M2/4‑1 (MQ=255) cgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc < 1:4446744‑M2/5‑1 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGcc < 1:5047463‑M2/6‑1 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGcc < 1:702428‑M2/6‑1 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:1609100‑M2/45‑49 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:7834640‑M2/45‑49 (MQ=255) tgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCa < 1:6958452‑M2/7‑1 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt < 1:8396970‑M2/9‑1 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt < 1:2172647‑M2/9‑1 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt > 1:1154817‑M2/42‑50 (MQ=255) ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg > 1:8442946‑M2/41‑50 (MQ=255) ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg < 1:7610006‑M2/10‑1 (MQ=255) gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt > 1:6946658‑M2/40‑50 (MQ=255) gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt < 1:4847264‑M2/11‑1 (MQ=255) cacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTc < 1:7180291‑M2/12‑1 (MQ=255) cacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTc < 1:1534238‑M2/12‑1 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgggtTACGCCATTGTcc > 1:6573194‑M2/38‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc < 1:4207193‑M2/13‑1 (MQ=255) cgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc > 1:8565199‑M2/37‑49 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCa < 1:3410780‑M2/15‑1 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCa < 1:7660504‑M2/15‑1 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa < 1:1074966‑M2/16‑1 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa < 1:615339‑M2/16‑1 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa > 1:63239‑M2/35‑50 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa > 1:7881189‑M2/35‑50 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt > 1:3843804‑M2/34‑50 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt < 1:6567414‑M2/17‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt > 1:1812937‑M2/34‑50 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc < 1:3667305‑M2/18‑1 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc > 1:8123887‑M2/33‑50 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc > 1:8221662‑M2/33‑50 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc < 1:4498711‑M2/18‑1 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg > 1:3380003‑M2/32‑50 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt < 1:5877732‑M2/20‑1 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt < 1:3468327‑M2/20‑1 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt > 1:4961268‑M2/31‑50 (MQ=255) ttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTc > 1:581291‑M2/30‑50 (MQ=255) ttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTc > 1:970648‑M2/30‑50 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt > 1:5120335‑M2/28‑50 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt > 1:6699829‑M2/28‑50 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt > 1:2854058‑M2/28‑50 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:4529969‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:4963692‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:5091111‑M2/23‑1 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTcc > 1:304433‑M2/26‑50 (MQ=255) gcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTg > 1:7189434‑M2/23‑49 (MQ=255) gcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTg > 1:1310088‑M2/23‑49 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGaa > 1:3881628‑M2/22‑50 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGa < 1:2999591‑M2/28‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt < 1:3927190‑M2/30‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:5487108‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:3162374‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:5036194‑M2/19‑50 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:8474847‑M2/19‑50 (MQ=255) ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg < 1:1869209‑M2/32‑1 (MQ=255) ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:8228126‑M2/18‑49 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:2541203‑M2/34‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:1808053‑M2/34‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:6083657‑M2/17‑48 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:215675‑M2/16‑50 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:912076‑M2/16‑50 (MQ=255) gaaagaagtttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:3890582‑M2/16‑50 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagca < 1:8554472‑M2/37‑1 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagca < 1:5648010‑M2/37‑1 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:8395105‑M2/14‑48 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:1763867‑M2/14‑48 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag > 1:4270573‑M2/13‑50 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag < 1:1050441‑M2/38‑1 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 1:4933234‑M2/12‑50 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 1:4651837‑M2/12‑50 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:4127892‑M2/39‑1 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:6583767‑M2/39‑1 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:6177920‑M2/11‑50 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:1921462‑M2/11‑50 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc < 1:3394821‑M2/41‑1 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:1806525‑M2/10‑49 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:7007313‑M2/10‑49 (MQ=255) gattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:3558227‑M2/9‑49 (MQ=255) gattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:3505088‑M2/9‑49 (MQ=255) gattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCa < 1:658449‑M2/42‑1 (MQ=255) gattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCa < 1:1440400‑M2/42‑1 (MQ=255) attgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:2472484‑M2/8‑50 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:362001‑M2/44‑1 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg > 1:3625571‑M2/5‑50 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg > 1:410110‑M2/5‑50 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg > 1:951891‑M2/5‑50 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg < 1:95255‑M2/45‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:6076024‑M2/46‑1 (MQ=255) gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt > 1:3581092‑M2/3‑49 (MQ=255) | TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625631‑3625726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |