| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 178 [0] | [0] 180 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 175 (1.530) | 81/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
Only 100 of 178 total aligned reads displayed.
GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332316‑332414 | ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg < 1:4993735/50‑1 (MQ=255)ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg < 1:5750864/50‑1 (MQ=255) gAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGg < 1:5478474‑M1/50‑2 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:8348435‑M1/1‑48 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:7967166‑M1/1‑48 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 1:441363‑M1/50‑3 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 1:2342477‑M1/50‑3 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:7037763‑M1/50‑4 (MQ=255) tCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat > 1:5614797‑M1/1‑46 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag < 1:3852310‑M1/50‑7 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:4602708‑M1/1‑44 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:5161114‑M1/1‑44 (MQ=255) gACAGGCAATCCCTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:5234722‑M1/1‑44 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:1108369‑M1/50‑8 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:3910002‑M1/50‑8 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt > 1:530104‑M1/1‑43 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:687860‑M1/50‑8 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt > 1:6986423‑M1/1‑43 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc > 1:6431673‑M1/1‑42 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg > 1:6490561‑M1/1‑41 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg > 1:3033511‑M1/1‑41 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt < 1:7643019‑M1/50‑11 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt < 1:8584806‑M1/50‑11 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:6077251‑M1/50‑12 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc > 1:4767960‑M1/1‑38 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcag < 1:3487549‑M1/49‑17 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:3034311‑M1/1‑33 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:1644330‑M1/1‑33 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcc > 1:2700879‑M1/1‑29 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcc < 1:3671945‑M1/50‑22 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc < 1:277215‑M1/49‑21 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatg < 1:7980197‑M1/48‑20 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 1:7817467‑M1/50‑23 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 1:2495600‑M1/50‑23 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 1:7174264‑M1/1‑28 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga > 1:8477591‑M1/1‑26 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga < 1:8499236‑M1/50‑25 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga < 1:2966912‑M1/50‑25 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:574056‑M1/49‑24 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:7151260‑M1/49‑24 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:4273253‑M1/1‑25 (MQ=255) gAACAGCGATAAAAGATAAAGGAGgataagtcgtgcgcagatgcctgatg > 1:520276‑M1/1‑24 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc < 1:1075930‑M1/50‑28 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg < 1:2233418‑M1/49‑27 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcg < 1:3867530‑M1/50‑29 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc > 1:3271728‑M1/1‑22 (MQ=255) cAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcga > 1:129158‑M1/1‑21 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:7041563‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:481135‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:2653251‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:5577471‑M1/50‑31 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg < 1:2139991‑M1/50‑32 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg > 1:5387259‑M1/1‑19 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:3150585‑M1/1‑18 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:1380336‑M1/1‑18 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:3986672‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:6651878‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:2108955‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:479024‑M1/1‑17 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta > 1:3221930‑M1/1‑16 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta > 1:6230980‑M1/1‑16 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:2389189‑M1/50‑36 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat > 1:8148199‑M1/1‑15 (MQ=255) aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg > 1:6310687‑M1/1‑14 (MQ=255) aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg > 1:532576‑M1/1‑14 (MQ=255) aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg > 1:1753053‑M1/1‑14 (MQ=255) aaaGATAAAGGTGggtaagtcgtgcgcagatgcctgatgcgacgctatg < 1:356283‑M1/49‑37 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:7833014‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:2212720‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:2531700‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg < 1:4375441‑M1/49‑37 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg < 1:1472573‑M1/49‑37 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg > 1:3713269‑M1/1‑12 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc > 1:5977833‑M1/1‑11 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc < 1:819821‑M1/50‑40 (MQ=255) gATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcg > 1:6606357‑M1/1‑10 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcggcgctatgcgcgt < 1:7210853‑M1/50‑42 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt < 1:6950906‑M1/50‑42 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt > 1:5405877‑M1/1‑9 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:742360‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:3937223‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:6652660‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:8060321‑M1/1‑8 (MQ=255) aaaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:5943712‑M1/1‑7 (MQ=255) aaaGGCGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:7729916‑M1/1‑7 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:328748‑M1/50‑45 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:7275390‑M1/1‑6 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:4142461‑M1/1‑6 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:2692547‑M1/1‑6 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta < 1:13411‑M1/50‑46 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta > 1:2541507‑M1/1‑5 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta < 1:6500545‑M1/50‑46 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta > 1:6274901‑M1/1‑5 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:7346639‑M1/1‑4 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:7132039‑M1/1‑4 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc < 1:4260485‑M1/50‑48 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc < 1:6582042‑M1/50‑48 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca < 1:8326038‑M1/50‑49 (MQ=255) ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag > 1:4573073‑M1/1‑1 (MQ=255) ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag > 1:3434588‑M1/1‑1 (MQ=255) | GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332316‑332414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |