| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 129 [0] | [0] 129 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 129 (1.130) | 70/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 129 total aligned reads displayed.
GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882704‑882800 | caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:5065619‑M2/50‑50 (MQ=255)caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:2374453‑M2/50‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:6159872‑M2/49‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:4019228‑M2/49‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 1:7814242‑M2/2‑1 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:8005890‑M2/49‑50 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg > 1:6756851‑M2/47‑49 (MQ=255) cggcaaaacgctggtagtcttttgttagccggataaggcaccgctTTGaa < 1:8378219‑M2/5‑1 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg < 1:5903978‑M2/6‑1 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:336649‑M2/7‑1 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:7590430‑M2/43‑49 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:2991814‑M2/43‑49 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCg < 1:7127856‑M2/8‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 1:3690027‑M2/41‑50 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg < 1:2282321‑M2/10‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 1:1129732‑M2/41‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc < 1:8426084‑M2/11‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc > 1:3476932‑M2/39‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:3749636‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:7272046‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:2625088‑M2/12‑1 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:200919‑M2/37‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:7897475‑M2/37‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:8596186‑M2/37‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:1541610‑M2/37‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:1116436‑M2/36‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:2701113‑M2/36‑50 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:8420899‑M2/35‑49 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:2711359‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:1361037‑M2/33‑50 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa < 1:1842695‑M2/18‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 1:3691947‑M2/17‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:6031250‑M2/32‑49 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:1297585‑M2/19‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:6958632‑M2/19‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:746539‑M2/19‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:6288858‑M2/19‑1 (MQ=255) agttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta > 1:6208601‑M2/31‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:3151631‑M2/30‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta < 1:4532819‑M2/20‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:7582570‑M2/22‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:903028‑M2/22‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:1096417‑M2/29‑49 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:4312905‑M2/29‑49 (MQ=255) tttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:2399857‑M2/28‑50 (MQ=255) tttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:7369478‑M2/28‑50 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:1366428‑M2/27‑49 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:4598504‑M2/23‑1 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtactac < 1:2637137‑M2/24‑1 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:7974042‑M2/26‑50 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:7744415‑M2/26‑50 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:5147235‑M2/26‑50 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:940740‑M2/26‑50 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt > 1:1805065‑M2/24‑50 (MQ=255) gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt > 1:5762352‑M2/23‑50 (MQ=255) gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt < 1:2042012‑M2/27‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 1:5055579‑M2/22‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:7914758‑M2/29‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt < 1:1640890‑M2/28‑1 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:5387253‑M2/20‑49 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:306900‑M2/20‑49 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 1:3759473‑M2/30‑1 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:6845154‑M2/20‑49 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTa < 1:7234945‑M2/32‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:5889909‑M2/18‑50 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:7524216‑M2/33‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:6174299‑M2/18‑50 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGc < 1:2724078‑M2/34‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGc < 1:1628889‑M2/34‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGc < 1:2888409‑M2/34‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGc < 1:7042907‑M2/34‑1 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:7511615‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 1:4199402‑M2/35‑1 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag < 1:5875991‑M2/38‑1 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:4820056‑M2/13‑47 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 1:6356758‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 1:3876521‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 1:5387495‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:4334402‑M2/40‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:2159745‑M2/40‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:7874686‑M2/40‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:3449157‑M2/41‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:6609905‑M2/41‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt > 1:2937801‑M2/9‑48 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:3541857‑M2/42‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:1989224‑M2/42‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg > 1:1796465‑M2/8‑50 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 1:1632213‑M2/43‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 1:4826995‑M2/43‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:1389077‑M2/7‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:232186‑M2/7‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:738569‑M2/7‑50 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTc < 1:5895016‑M2/45‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa > 1:7560198‑M2/5‑50 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa < 1:6509648‑M2/46‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa > 1:4320824‑M2/5‑50 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa < 1:5084572‑M2/46‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 1:1969297‑M2/47‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 1:801246‑M2/4‑50 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:3160228‑M2/2‑49 (MQ=255) | GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882704‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |