| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 112 [0] | [0] 109 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 108 (0.950) | 58/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 109 total aligned reads displayed.
TTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482207‑1482305 | acctatcggcagaccgacaagataccacgccagcacatcgcagccatact < 1:2374586‑M2/1‑1 (MQ=255)acctatcggcagaccgacaagataccacgccagcacatcgcagccatact < 1:6570235‑M2/1‑1 (MQ=255)acctatcggcagaccgacaagataccacgccagcacatcgcagccatact < 1:6378805‑M2/1‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa > 1:2823167‑M2/49‑50 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:1195807‑M2/2‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:2353524‑M2/2‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:7871804‑M2/2‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:1478150‑M2/2‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:7640571‑M2/2‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa > 1:1717903‑M2/49‑50 (MQ=255) cctatcggcagaccgacaagataccacgccagcacaccgcagccatacTa < 1:8371207‑M2/2‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt > 1:1709163‑M2/48‑50 (MQ=255) tatctgcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:564403‑M2/47‑50 (MQ=255) tatcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:3455098‑M2/47‑50 (MQ=255) tatcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:7903895‑M2/47‑50 (MQ=255) tatcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:955271‑M2/47‑50 (MQ=255) tatcggcagaccgacaagataccacgccagcacatcgcacccatacTATg > 1:4872757‑M2/47‑50 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:8303136‑M2/45‑48 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg < 1:4096634‑M2/4‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGc < 1:5157362‑M2/5‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGc < 1:3466558‑M2/5‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGCa < 1:5573707‑M2/6‑1 (MQ=255) cggcagaccgacaagataccacgctagcacatcgcagccatacTATg > 1:5112820‑M2/44‑47 (MQ=255) cggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:3694191‑M2/44‑47 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 1:7712694‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 1:527902‑M2/8‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 1:7153568‑M2/8‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 1:5964704‑M2/9‑1 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:7938721‑M2/41‑50 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa < 1:7208236‑M2/10‑1 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:1808052‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:5437435‑M2/40‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:6176613‑M2/39‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACa < 1:1132381‑M2/12‑1 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 1:6371714‑M2/38‑50 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 1:5501641‑M2/38‑50 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa < 1:4539608‑M2/13‑1 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa < 1:357476‑M2/13‑1 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:1236618‑M2/14‑1 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt > 1:8139247‑M2/37‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg > 1:4242184‑M2/36‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg > 1:7294064‑M2/36‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:6461665‑M2/15‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc > 1:5064979‑M2/35‑50 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:6457879‑M2/16‑1 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 1:7717683‑M2/17‑1 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 1:8556905‑M2/17‑1 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt > 1:3791966‑M2/34‑50 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:7211206‑M2/33‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:1932386‑M2/32‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:8046834‑M2/32‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:7044678‑M2/32‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:6795176‑M2/32‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:8275288‑M2/32‑50 (MQ=255) agataccacgccagcacatcgcagtcatacTATGCAGAAACAATGCTGTc < 1:7583968‑M2/20‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:1660721‑M2/31‑50 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc < 1:1791748‑M2/20‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:2673315‑M2/31‑50 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:1171619‑M2/30‑49 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:5446946‑M2/30‑49 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:658536‑M2/21‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa < 1:4889959‑M2/22‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:3768618‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt > 1:8265604‑M2/28‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg < 1:5568064‑M2/25‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:4758792‑M2/25‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:3809948‑M2/27‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:1460340‑M2/24‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:6862613‑M2/24‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:5804664‑M2/24‑50 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:7199055‑M2/28‑1 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg > 1:5990133‑M2/23‑50 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAGGgctg < 1:6570321‑M2/28‑1 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc > 1:3829003‑M2/22‑50 (MQ=255) tcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTc < 1:5839766‑M2/38‑1 (MQ=255) tcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTc < 1:1582157‑M2/38‑1 (MQ=255) cgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:1303199‑M2/12‑48 (MQ=255) cgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:6189987‑M2/12‑48 (MQ=255) cgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:7720258‑M2/12‑48 (MQ=255) cgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:8210108‑M2/12‑48 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:7466706‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAg < 1:723538‑M2/40‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:6911389‑M2/10‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:461935‑M2/9‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt > 1:7863384‑M2/8‑50 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg < 1:2465824‑M2/44‑1 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 1:8550519‑M2/7‑50 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg < 1:870024‑M2/44‑1 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:6524561‑M2/45‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 1:3091129‑M2/5‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 1:5121066‑M2/5‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:6813411‑M2/46‑1 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:3683045‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:1183500‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:2965724‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:6170561‑M2/3‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:4329247‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:7215165‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:2695411‑M2/2‑50 (MQ=255) tATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCttt > 1:4570255/1‑50 (MQ=255) | TTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482207‑1482305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |