BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,581,139	3915 bp→CAAATG		[yhhY]–yrhB	[yhhY], yhhZ, yrhA, insA‑6, insB‑6, yrhA, yrhD, yrhB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3581139	3585053	3915	150 [0]	[0] 139	[yhhY]–yrhB	[yhhY],yhhZ,yrhA,insA‑6,insB‑6,yrhA,yrhD,yrhB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3581138	0 (0.000)	128 (1.280) +CAAATG	65/86	0.0	100%	coding (1/489 nt)	yhhY	N‑acetyltransferase YhhY
*	?	NC_000913	3585054 =	0 (0.000)	128 (1.280) +CAAATG	65/86	0.0	100%	intergenic (+11/+27)	yrhB/ggt	putative heat shock chaperone/glutathione hydrolase proenzyme

Only 100 of 139 total aligned reads displayed.

GATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCAT  >  NC_000913/3585005‑3585103

aatgatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgc                                                   <  1:5079272‑M2/1‑1 (MQ=255)

aatgatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgc                                                   >  1:3773801‑M2/50‑50 (MQ=255)

aatgatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgc                                                   >  1:2752388‑M2/50‑50 (MQ=255)

aatgatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgc                                                   <  1:228542‑M2/1‑1 (MQ=255)

 atgatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgct                                                  >  1:3063106‑M2/49‑50 (MQ=255)

  tgatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgctc                                                 <  1:5764509‑M2/3‑1 (MQ=255)

  tgatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgctc                                                 <  1:5477596‑M2/3‑1 (MQ=255)

  tgatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgctc                                                 <  1:4772721‑M2/3‑1 (MQ=255)

   gatgttgaaagggacatttaccccaaagaggacaaaggaacaaatgctct                                                >  1:1844404‑M2/47‑50 (MQ=255)

    atgttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCtt                                               >  1:4589347‑M2/46‑50 (MQ=255)

    atgttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCtt                                               <  1:295994‑M2/5‑1 (MQ=255)

     tgttgaaagtgacatttaccccaaagaggacaaaggaacaaatgCTCTTc                                              >  1:6841690‑M2/45‑50 (MQ=255)

     tgttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTc                                              <  1:6549809‑M2/6‑1 (MQ=255)

      gttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTcc                                             >  1:1083833‑M2/44‑50 (MQ=255)

       ttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTccc                                            <  1:1143677‑M2/8‑1 (MQ=255)

       ttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTcc                                             >  1:4830659‑M2/43‑49 (MQ=255)

       ttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTcc                                             >  1:1067895‑M2/43‑49 (MQ=255)

       ttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTcc                                             <  1:3344831‑M2/7‑1 (MQ=255)

       ttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTcc                                             <  1:3389‑M2/7‑1 (MQ=255)

       ttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTcc                                             >  1:8003287‑M2/43‑49 (MQ=255)

       ttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTcc                                             <  1:5599769‑M2/7‑1 (MQ=255)

       ttgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTcc                                             <  1:5355355‑M2/7‑1 (MQ=255)

        tgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCa                                           >  1:7831363‑M2/42‑50 (MQ=255)

        tgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCa                                           >  1:8555682‑M2/42‑50 (MQ=255)

        tgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCa                                           >  1:1992113‑M2/42‑50 (MQ=255)

        tgaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCa                                           >  1:3518660‑M2/42‑50 (MQ=255)

         gaaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCa                                           <  1:7937327‑M2/9‑1 (MQ=255)

          aaagggacatttaccccaacgaggacaaaggaacaaatgCTCTTCCCAc                                          >  1:5789770‑M2/40‑49 (MQ=255)

          aaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCAc                                          <  1:5915408‑M2/10‑1 (MQ=255)

          aaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCAc                                          <  1:3271811‑M2/10‑1 (MQ=255)

          aaagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACg                                         <  1:7602015‑M2/11‑1 (MQ=255)

           aagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACg                                         >  1:7293095‑M2/39‑49 (MQ=255)

           aagggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACg                                         >  1:6545286‑M2/39‑49 (MQ=255)

             gggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACg                                         >  1:2861144‑M2/37‑47 (MQ=255)

             gggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACGAag                                      <  1:7129092‑M2/14‑1 (MQ=255)

              ggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACGaa                                       >  1:3543505‑M2/36‑48 (MQ=255)

              ggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACGaa                                       >  1:3148314‑M2/36‑48 (MQ=255)

              ggacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACGaa                                       >  1:1104199‑M2/36‑48 (MQ=255)

               gacatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACGAagag                                    <  1:2886353‑M2/16‑1 (MQ=255)

                acatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAgg                                   <  1:6347616‑M2/17‑1 (MQ=255)

                acatttaccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAgg                                   >  1:4026458‑M2/34‑50 (MQ=255)

                 catttaccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAggg                                  <  1:1438467‑M2/18‑1 (MQ=255)

                     taccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCg                               <  1:4351197‑M2/21‑1 (MQ=255)

                     taccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGc                              >  1:2534984‑M2/29‑50 (MQ=255)

                     taccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGc                              >  1:8348436‑M2/29‑50 (MQ=255)

                     taccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGc                              >  1:1359868‑M2/29‑50 (MQ=255)

                     taccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGc                              >  1:1824373‑M2/29‑50 (MQ=255)

                      accccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGc                              >  1:8574110‑M2/28‑49 (MQ=255)

                      accccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGc                              >  1:7674610‑M2/28‑49 (MQ=255)

                      accccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGc                              >  1:8143113‑M2/28‑49 (MQ=255)

                       ccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCt                             <  1:6913832‑M2/23‑1 (MQ=255)

                       ccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCt                             <  1:5273457‑M2/23‑1 (MQ=255)

                       ccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCt                             >  1:7332303‑M2/27‑49 (MQ=255)

                       ccccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTa                            <  1:8400861‑M2/24‑1 (MQ=255)

                        cccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTaa                           >  1:8374658‑M2/26‑50 (MQ=255)

                         ccaaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAAc                          >  1:7917154‑M2/25‑50 (MQ=255)

                          caaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAAcc                         >  1:6150557‑M2/24‑50 (MQ=255)

                          caaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAAcc                         >  1:8251599‑M2/24‑50 (MQ=255)

                          caaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAAcc                         >  1:8131542‑M2/24‑50 (MQ=255)

                           aaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCt                        <  1:1882470‑M2/28‑1 (MQ=255)

                           aaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCt                        <  1:1450345‑M2/28‑1 (MQ=255)

                           aaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCt                        >  1:3635375‑M2/23‑50 (MQ=255)

                           aaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCt                        <  1:2600150‑M2/28‑1 (MQ=255)

                           aaagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCt                        >  1:2040483‑M2/23‑50 (MQ=255)

                            aagaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCtt                       <  1:4911450‑M2/29‑1 (MQ=255)

                             agaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCt                        >  1:3937464‑M2/21‑48 (MQ=255)

                             agaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTa                      <  1:2353479‑M2/30‑1 (MQ=255)

                             agaggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTa                      <  1:7279110‑M2/30‑1 (MQ=255)

                               aggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAg                     >  1:4748056‑M2/19‑49 (MQ=255)

                               aggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAg                     >  1:3140119‑M2/19‑49 (MQ=255)

                               aggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGt                    <  1:7020243‑M2/32‑1 (MQ=255)

                               aggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGt                    <  1:5122487‑M2/32‑1 (MQ=255)

                               aggacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGt                    <  1:7574040‑M2/32‑1 (MQ=255)

                                 gacaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAc                  >  1:5027714‑M2/17‑50 (MQ=255)

                                 gacaaaggaacaaatgCTCTTCCCACGAAGAGGACCGCTAACCTTAGTAc                  <  1:1514660‑M2/34‑1 (MQ=255)

                                  acaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAcc                 >  1:5376174‑M2/16‑50 (MQ=255)

                                  acaaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAcc                 <  1:7735876‑M2/35‑1 (MQ=255)

                                   caaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAccc                >  1:2781322‑M2/15‑50 (MQ=255)

                                    aaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAcccc               <  1:7439918‑M2/37‑1 (MQ=255)

                                    aaaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAcccc               >  1:4049705‑M2/14‑50 (MQ=255)

                                     aaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccg              >  1:3083801‑M2/13‑50 (MQ=255)

                                     aaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccg              >  1:1262906‑M2/13‑50 (MQ=255)

                                     aaggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccg              >  1:1157392‑M2/13‑50 (MQ=255)

                                      aggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgc             >  1:5421247‑M2/12‑50 (MQ=255)

                                      aggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgc             >  1:386284‑M2/12‑50 (MQ=255)

                                      aggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgc             >  1:6886510‑M2/12‑50 (MQ=255)

                                       ggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgcc            >  1:2347585‑M2/11‑50 (MQ=255)

                                       ggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgcc            <  1:7882967‑M2/40‑1 (MQ=255)

                                       ggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgcc            <  1:4220871‑M2/40‑1 (MQ=255)

                                       ggaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgcc            <  1:736717‑M2/40‑1 (MQ=255)

                                        gaacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgccg           <  1:1748802‑M2/41‑1 (MQ=255)

                                         aacaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGt          >  1:6626152‑M2/9‑50 (MQ=255)

                                          acaaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGt          >  1:2626070‑M2/8‑49 (MQ=255)

                                            aaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTa        >  1:6713624‑M2/6‑49 (MQ=255)

                                            aaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTa        >  1:1487705‑M2/6‑49 (MQ=255)

                                            aaatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTa        >  1:3632950‑M2/6‑49 (MQ=255)

                                             aatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTaaa      >  1:7484322‑M2/5‑50 (MQ=255)

                                             aatgCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTaaa      >  1:3480629‑M2/5‑50 (MQ=255)

                                                gCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCa   >  1:1333952‑M2/2‑50 (MQ=255)

                                                 ctctTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAatcat  >  1:694255/1‑50 (MQ=255)

GATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCAT  >  NC_000913/3585005‑3585103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`