| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,342,616 | 0 | G | A | 48.2% | 16.3 / 187.5 | 114 | V518V (GTC→GTT) | yfaL | putative autotransporter adhesin YfaL |
| Reads supporting (aligned to +/- strand): ref base G (25/34); new base A (31/24); total (56/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 116 total aligned reads displayed.
CAAGATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTGGAGAAA > NC_000913/2342567‑2342664 | cAAGATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTg < 1:1180240/50‑1 (MQ=255) aaGATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGa > 1:4668491/1‑50 (MQ=255) aGATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAAc > 1:895442/1‑50 (MQ=255) aGATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAAc > 1:1268113/1‑50 (MQ=255) gATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACt < 1:269228/50‑1 (MQ=255) gATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACt < 1:327205/50‑1 (MQ=255) gATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACt > 1:8391502/1‑50 (MQ=255) aTCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACtt > 1:2110568/1‑50 (MQ=255) tCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACtt > 1:2577547/1‑49 (MQ=255) cTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTc > 1:1038747/1‑49 (MQ=255) tACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTc > 1:2326350/1‑48 (MQ=255) aCCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAg > 1:3861778/1‑50 (MQ=255) ccACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCaa < 1:5269206/48‑1 (MQ=255) ccACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAgg > 1:7951641/1‑50 (MQ=255) ccACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAgg < 1:5963250/50‑1 (MQ=255) ccACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAgg < 1:7844946/50‑1 (MQ=255) ccACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCa < 1:7224586/47‑1 (MQ=255) ccACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAgg > 1:5818961/1‑50 (MQ=255) ccACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAg < 1:1325813/49‑1 (MQ=255) cacaTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGc < 1:4605515/50‑1 (MQ=255) cacaTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGc < 1:6468514/50‑1 (MQ=255) cacaTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGc > 1:3589857/1‑50 (MQ=255) cacaTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGc > 1:5101277/1‑50 (MQ=255) acaTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGcc < 1:7590753/50‑1 (MQ=255) acaTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGc > 1:2326396/1‑49 (MQ=255) caTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCa > 1:1015071/1‑50 (MQ=255) caTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCa > 1:6522525/1‑50 (MQ=255) caTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCa > 1:2953336/1‑50 (MQ=255) aTCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCAt > 1:7770196/1‑50 (MQ=255) tCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATc < 1:6932986/50‑1 (MQ=255) tCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATc < 1:3352450/50‑1 (MQ=255) tCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATc > 1:7541077/1‑50 (MQ=255) tCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATc < 1:757099/50‑1 (MQ=255) tCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATc < 1:492038/50‑1 (MQ=255) tCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATc > 1:4201913/1‑50 (MQ=255) tCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATc < 1:1406395/50‑1 (MQ=255) ccTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCg > 1:2175566/1‑50 (MQ=255) cTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCg < 1:7270812/49‑1 (MQ=255) cTGACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGt > 1:3614176/1‑50 (MQ=255) gACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTg > 1:8432450/1‑50 (MQ=255) gACTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTg > 1:2621946/1‑50 (MQ=255) aCTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGtt < 1:2661746/48‑1 (MQ=255) aCTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGtt < 1:1024535/48‑1 (MQ=255) cTGCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTa > 1:3971354/1‑50 (MQ=255) gCCGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTat > 1:6628238/1‑49 (MQ=255) ccGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTatga < 1:1978548/50‑1 (MQ=255) ccGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTat < 1:1039000/48‑1 (MQ=255) ccGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTatg < 1:2485243/49‑1 (MQ=255) ccGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTat < 1:1846811/48‑1 (MQ=255) cGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTatgat > 1:7174434/1‑50 (MQ=255) cGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTatgat > 1:3666468/1‑50 (MQ=255) cGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTatgat < 1:5249334/50‑1 (MQ=255) cGATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTatgat > 1:7870358/1‑50 (MQ=255) gATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTatgatg < 1:2872855/50‑1 (MQ=255) gATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTatgatg > 1:6860508/1‑50 (MQ=255) gATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTatgatg < 1:4749239/50‑1 (MQ=255) gATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTatgatg < 1:6798801/50‑1 (MQ=255) gATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTatgatg < 1:6130036/50‑1 (MQ=255) gATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTatgatg > 1:4727602/1‑50 (MQ=255) gATAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGAatgatg > 1:4068225/1‑50 (MQ=255) aTAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTATGAtgt < 1:1883934/50‑1 (MQ=255) tAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTATGAtgtg < 1:4874766/50‑1 (MQ=255) tAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTATGAtgtg > 1:463718/1‑50 (MQ=255) tAACCGTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTATGAtgtg < 1:7799225/50‑1 (MQ=255) aCCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGcc < 1:8394517/50‑1 (MQ=255) ccGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCg > 1:3514402/1‑50 (MQ=255) gTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGct < 1:7525360/50‑1 (MQ=255) gTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGct < 1:1581659/50‑1 (MQ=255) gTTCCGCTGCTGCCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGct < 1:3253143/50‑1 (MQ=255) ttCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGctc > 1:5421129/1‑50 (MQ=255) tCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGctct > 1:6937226/1‑50 (MQ=255) ccGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGctct < 1:6755840/49‑1 (MQ=255) ccGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGctct < 1:1832605/49‑1 (MQ=255) ccGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGctct < 1:3784916/49‑1 (MQ=255) ccGCTGCTGCCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGctct < 1:1029275/49‑1 (MQ=255) ccGCTGCTGCCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGctct < 1:6286635/49‑1 (MQ=255) cGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTg < 1:5770706/49‑1 (MQ=255) gctgctGCCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGcc < 1:8467668/50‑1 (MQ=255) gctgctGCCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGc > 1:7683075/1‑49 (MQ=255) ctgctgCCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGc > 1:7578462/1‑48 (MQ=255) tgctgcCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAg > 1:2417881/1‑50 (MQ=255) ctgcCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAg < 1:4572355/48‑1 (MQ=255) ctgcCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGt < 1:7650637/50‑1 (MQ=255) ctgcCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAgg < 1:7659762/49‑1 (MQ=255) ctgcCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGt < 1:8389798/50‑1 (MQ=255) tgcCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg > 1:27403/1‑50 (MQ=255) tgcCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg > 1:7338429/1‑50 (MQ=255) gcCACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg > 1:5698790/1‑49 (MQ=255) ccACTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg < 1:757960/48‑1 (MQ=255) ccACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg > 1:3759219/1‑48 (MQ=255) ccACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg > 1:5119802/1‑48 (MQ=255) cACTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg > 1:2941892/1‑47 (MQ=255) cACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg > 1:4269530/1‑47 (MQ=255) cACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTg > 1:6991520/1‑47 (MQ=255) cACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTGgag < 1:5331728/50‑1 (MQ=255) cACTAACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTGgag < 1:2674843/50‑1 (MQ=255) aCTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTGgag > 1:4972485/1‑49 (MQ=255) cTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTGgaga > 1:5754523/1‑49 (MQ=255) cTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTGGAGaa < 1:4482293/50‑1 (MQ=255) tGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTGGAGaaa > 1:7515691/1‑50 (MQ=255) | CAAGATCTACCACATCCTGACTGCCGATAACCGTTCCGCTGCTGCCACTGACTTCAAGGCCATCGTTGTATGATGTGCCGCTCTGCCAGGTGGAGAAA > NC_000913/2342567‑2342664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |