| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.9% | 327.4 / 256.7 | 241 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base C (91/73); new base T (35/42); total (126/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.12e-03 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 244 total aligned reads displayed.
GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCG > NC_000913/4296011‑4296108 | gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc > 1:7690343/1‑50 (MQ=38) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc < 1:2906488/50‑1 (MQ=38) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc < 1:5134592/50‑1 (MQ=38) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:1861245/1‑50 (MQ=38) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:6221249/1‑50 (MQ=38) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:2048117/1‑50 (MQ=38) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 1:3337608/49‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTg < 1:5150253/50‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt < 1:3546210/49‑1 (MQ=38) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTg < 1:1450724/50‑1 (MQ=38) ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa > 1:828596/1‑50 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 1:8504772/49‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 1:74593/49‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 1:213856/49‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg > 1:6266304/1‑50 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATg > 1:275697/1‑50 (MQ=38) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg < 1:5106717/49‑1 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:112624/1‑50 (MQ=38) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:5354465/49‑1 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa > 1:2175406/1‑50 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa > 1:4235225/1‑50 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa > 1:1329185/1‑50 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa < 1:6095088/50‑1 (MQ=38) aGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAc > 1:7632719/1‑50 (MQ=38) ggTCGGATAAGGCGTTTACGCCGCATCCGCCATCAACGCCTGATGCGCCg > 1:8604453/1‑50 (MQ=11) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc < 1:5378814/49‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg > 1:6638799/1‑50 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg < 1:6347620/50‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg > 1:8222988/1‑50 (MQ=38) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc > 1:5059136/1‑50 (MQ=38) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc > 1:2690191/1‑50 (MQ=38) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc > 1:3272287/1‑50 (MQ=38) tCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCt < 1:1575190/50‑1 (MQ=255) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt < 1:844885/50‑1 (MQ=38) tCGGATAAGGCGCTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt > 1:7086860/1‑50 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt > 1:2860410/1‑50 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt > 1:2356908/1‑50 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 1:7218921/1‑50 (MQ=38) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 1:3443458/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt < 1:1960545/49‑1 (MQ=38) gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc > 1:4919670/1‑50 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc < 1:7294250/50‑1 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc > 1:5821002/1‑50 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc < 1:7543969/50‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg < 1:5760523/50‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg > 1:3873296/1‑50 (MQ=255) tAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg < 1:853389/50‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcg < 1:4147224/50‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc > 1:1090188/1‑50 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc > 1:2999257/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc < 1:6058455/49‑1 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg > 1:591671/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg > 1:7787650/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc < 1:2805333/49‑1 (MQ=255) gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCGGCGTc < 1:8079605/50‑1 (MQ=255) gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTc > 1:774182/1‑50 (MQ=255) cGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:1744635/1‑50 (MQ=255) cGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt < 1:822891/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:2631691/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:1878391/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:5222817/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:1504472/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:6719535/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt < 1:1228683/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt < 1:652409/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt > 1:3664791/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt > 1:4581112/1‑49 (MQ=255) tttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa < 1:6777179/50‑1 (MQ=255) tttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa < 1:5883984/50‑1 (MQ=255) tttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa < 1:3904998/50‑1 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa < 1:2738622/50‑1 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa > 1:5548780/1‑50 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa < 1:4333852/50‑1 (MQ=255) ttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:7934353/1‑50 (MQ=255) tACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:3999796/49‑1 (MQ=12) tACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:5742277/49‑1 (MQ=12) aCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:5576681/1‑48 (MQ=255) aCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:600916/1‑48 (MQ=255) aCGCCGCATCCGACATCAACGCCTGATGCGACGATTGCCGCGTCTTATc < 1:2205880/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg > 1:3203804/1‑50 (MQ=255) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:2241851/50‑1 (MQ=40) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:6903852/1‑50 (MQ=38) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:4389691/1‑50 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:7337930/50‑1 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:1386402/50‑1 (MQ=38) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc < 1:3764155/50‑1 (MQ=40) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:7666427/1‑50 (MQ=40) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc < 1:3087452/50‑1 (MQ=40) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg > 1:3499344/1‑50 (MQ=255) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg > 1:6996799/1‑50 (MQ=255) ccGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:6229500/1‑50 (MQ=255) ccGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:4826248/1‑50 (MQ=255) ccGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:6496779/1‑50 (MQ=255) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc < 1:1247380/49‑1 (MQ=255) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 1:6074620/50‑1 (MQ=255) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 1:1917215/1‑49 (MQ=255) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc > 1:5514336/1‑50 (MQ=38) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc < 1:2506262/50‑1 (MQ=38) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAg < 1:2388358/49‑1 (MQ=38) aaCGCCTGATGCGACGATTGCCGCGTCTTATCAGGCCTACGCCAGACAgc < 1:5018356/50‑1 (MQ=255) | GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCG > NC_000913/4296011‑4296108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |