| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 34,111 | 1 | . | T | 61.0% | 252.9 / 164.6 | 101 | intergenic (+73/‑189) | carB/caiF | carbamoyl phosphate synthetase subunit beta/DNA‑binding transcriptional activator CaiF |
| Reads supporting (aligned to +/- strand): ref base . (19/20); new base T (31/30); total (51/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 131 total aligned reads displayed.
TCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTT > NC_000913/34062‑34157 | tCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCg > 1:6243014/1‑50 (MQ=255) cATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCg < 1:5630676/49‑1 (MQ=255) aTCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑tt > 1:3054047/1‑50 (MQ=255) aTCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑tt < 1:8513054/50‑1 (MQ=255) tCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttt > 1:1060328/1‑50 (MQ=255) tCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttt < 1:6873340/50‑1 (MQ=255) cGCTAATTTGATCGAATAACTACTACGGTTCTCTGATGAGGACCG‑ttttt > 1:7780625/1‑50 (MQ=255) cGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttt > 1:382376/1‑50 (MQ=255) cGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttt < 1:2606166/50‑1 (MQ=255) cGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttt < 1:2458271/50‑1 (MQ=255) cGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑tttt < 1:7659077/49‑1 (MQ=255) gCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑tttttt > 1:1959419/1‑50 (MQ=255) cTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttttt > 1:58472/1‑50 (MQ=255) cTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttttt > 1:1082259/1‑50 (MQ=255) aaTTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttttttt > 1:6875742/1‑50 (MQ=255) aaTTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttttttt > 1:2413531/1‑50 (MQ=255) aTTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑tttttttttt > 1:4844894/1‑49 (MQ=255) aTTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttttttt < 1:8561304/49‑1 (MQ=255) aTTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttttttt < 1:3485562/49‑1 (MQ=255) aTTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑ttttttttt < 1:7550306/49‑1 (MQ=255) aTTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑tttttttt < 1:5472850/48‑1 (MQ=255) aTTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑tttttttt < 1:8368029/48‑1 (MQ=255) tttGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGc < 1:8091417/50‑1 (MQ=255) ttGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGcc > 1:4290459/1‑50 (MQ=255) aTCGAATAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCa < 1:7338865/50‑1 (MQ=255) aTCGAATAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCa < 1:2946287/50‑1 (MQ=255) aTCGAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCa < 1:7713917/49‑1 (MQ=255) aTCGAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCAt < 1:2651448/50‑1 (MQ=255) tCGAATAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCAt < 1:5055110/50‑1 (MQ=255) tCGAATAACTAATACGGTTCTCGGATGAGGACCG‑TTTTTTTTTGCCCAtt < 1:6426581/50‑1 (MQ=255) cGAATAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCAt > 1:4205137/1‑49 (MQ=255) cGAATAACTAATACGGTTCTCTGATGAGGACCG‑‑TTTTTTTTGCCCAtt > 1:1945360/1‑48 (MQ=255) gAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCAtt > 1:6712404/1‑48 (MQ=255) gAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCAtt > 1:1092396/1‑48 (MQ=255) gAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCAtt > 1:176463/1‑48 (MQ=255) gAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTaa < 1:3320755/50‑1 (MQ=255) gAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTa < 1:6969951/49‑1 (MQ=255) aaTAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCAtt > 1:1326091/1‑48 (MQ=255) aaTAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCAtt > 1:1118485/1‑48 (MQ=255) aTAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTaa < 1:5726270/49‑1 (MQ=255) aTAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAg < 1:2861152/50‑1 (MQ=255) tAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTAAGTa < 1:4472107/50‑1 (MQ=255) aaCTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGt > 1:6568275/1‑49 (MQ=255) aaCTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGt > 1:5227187/1‑49 (MQ=255) aaCTAATACGGTTCTCTGATGAGGACCGCTTTTTTTTCGCCCATTAAGt > 1:4724827/1‑49 (MQ=38) aCTAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTa > 1:1563776/1‑49 (MQ=255) tAATACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAAt > 1:6939986/1‑50 (MQ=255) aTACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAAt < 1:7647190/48‑1 (MQ=255) aTACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATc < 1:4137411/49‑1 (MQ=255) aTACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATc < 1:8174410/49‑1 (MQ=255) aTACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCt > 1:806360/1‑50 (MQ=255) aTACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCtt > 1:1050549/1‑50 (MQ=255) tACGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCtt < 1:5599163/50‑1 (MQ=255) tACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCttt < 1:3545702/50‑1 (MQ=255) cGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCtttt < 1:7744131/50‑1 (MQ=255) cGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCtttt > 1:2790340/1‑50 (MQ=255) cGGTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCttt < 1:2811918/49‑1 (MQ=255) ggTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTg < 1:2948801/50‑1 (MQ=255) gTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTgg < 1:5283630/50‑1 (MQ=255) gTTCTCTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTgg < 1:3308909/50‑1 (MQ=255) gTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTggg < 1:4904154/50‑1 (MQ=255) gTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTggg < 1:4466898/50‑1 (MQ=255) tctcTGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTggg > 1:6645207/1‑49 (MQ=255) ctctGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTgggg < 1:5455072/49‑1 (MQ=255) ctctGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTgggg > 1:6952717/1‑49 (MQ=255) ctctGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTgggg < 1:6205655/49‑1 (MQ=255) tctGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGaa > 1:4511073/1‑50 (MQ=255) tctGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGaa > 1:6665945/1‑50 (MQ=255) tctGATGAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAAt > 1:7795629/1‑50 (MQ=255) ctGATGAGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAAt > 1:2153591/1‑50 (MQ=255) ctGATGAGGACCG‑TTTTTTTTTGCTCATTAAGTAAATCTTTTGGGGAATc > 1:4743842/1‑50 (MQ=255) tgatgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGaa < 1:2460735/48‑1 (MQ=255) tgatgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGa < 1:1495214/47‑1 (MQ=255) tgatgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATc > 1:5200804/1‑50 (MQ=255) tgatgaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATc > 1:7858051/1‑49 (MQ=255) gatgaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGa > 1:1848051/1‑50 (MQ=255) atgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAAt < 1:5310964/47‑1 (MQ=255) atgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAAt < 1:2980212/47‑1 (MQ=255) atgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATc < 1:5791831/48‑1 (MQ=255) atgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATc < 1:5233975/48‑1 (MQ=255) atgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGa > 1:1343083/1‑50 (MQ=255) atgaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGa > 1:4746518/1‑50 (MQ=255) atgaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATc < 1:2961098/47‑1 (MQ=255) atgaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGat < 1:4211961/50‑1 (MQ=255) atgaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGa < 1:1979580/49‑1 (MQ=255) atgaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGa > 1:6185101/1‑49 (MQ=255) atgaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGa < 1:7670925/49‑1 (MQ=255) aGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGatat > 1:2721102/1‑50 (MQ=255) aGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGatat < 1:383597/50‑1 (MQ=255) aGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGatat > 1:7222098/1‑50 (MQ=255) aGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGata < 1:685094/49‑1 (MQ=255) aGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGatat < 1:875061/49‑1 (MQ=255) aGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAtt < 1:3934466/50‑1 (MQ=255) aGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAtt > 1:139709/1‑50 (MQ=255) aGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAtt < 1:5572938/50‑1 (MQ=255) ggACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAtt < 1:1636541/50‑1 (MQ=255) gACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAtttt < 1:6773254/50‑1 (MQ=255) gACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAtttt > 1:6344723/1‑50 (MQ=255) aCCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAttttt > 1:3587640/1‑50 (MQ=255) aCCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAttttt > 1:8562073/1‑50 (MQ=255) | TCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTT > NC_000913/34062‑34157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |