Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 12,086 C→T intergenic (‑300/‑77) yaaI ← / → dnaK DUF2541 domain‑containing protein YaaI/chaperone protein DnaK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091312,0860CT100.0% 390.9 / NA 101intergenic (‑300/‑77)yaaI/dnaKDUF2541 domain‑containing protein YaaI/chaperone protein DnaK
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (61/40);  total (61/40)

Only 100 of 101 total aligned reads displayed.

TAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACAT  >  NC_000913/12040‑12132
                                              |                                              
tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg                                              <  1:5614515/49‑1 (MQ=255)
tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg                                              <  1:207617/49‑1 (MQ=255)
tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt                                             >  1:924537/1‑50 (MQ=255)
 agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt                                            >  1:4973341/1‑50 (MQ=255)
  gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt                                            <  1:4464570/49‑1 (MQ=255)
  gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt                                            <  1:7912131/49‑1 (MQ=255)
  gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt                                            <  1:417286/49‑1 (MQ=255)
  gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg                                           <  1:5970535/50‑1 (MQ=255)
  gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg                                           <  1:2058376/50‑1 (MQ=255)
    agtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa                                          >  1:7916011/1‑49 (MQ=255)
    agtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa                                          >  1:7803515/1‑49 (MQ=255)
    agtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa                                          >  1:275820/1‑49 (MQ=255)
     gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa                                        <  1:7715103/50‑1 (MQ=255)
      tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       <  1:6670592/50‑1 (MQ=255)
      tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  1:797391/1‑50 (MQ=255)
      tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  1:3018117/1‑50 (MQ=255)
       cAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  1:6745702/1‑49 (MQ=255)
         aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                       >  1:1819163/1‑47 (MQ=255)
          ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa                                   >  1:7894665/1‑50 (MQ=255)
          ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa                                   <  1:3686519/50‑1 (MQ=255)
          ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa                                   >  1:5497036/1‑50 (MQ=255)
          ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa                                   <  1:1021034/50‑1 (MQ=255)
           cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  <  1:2916426/50‑1 (MQ=255)
           cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  <  1:5607411/50‑1 (MQ=255)
           cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  <  1:1887247/50‑1 (MQ=255)
           cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                  <  1:5151463/50‑1 (MQ=255)
            gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg                                 >  1:6094884/1‑50 (MQ=255)
            gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg                                 >  1:845949/1‑50 (MQ=255)
              agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                               >  1:2668784/1‑50 (MQ=255)
              agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                               >  1:5833953/1‑50 (MQ=255)
              agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                               <  1:5517331/50‑1 (MQ=255)
               gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt                              <  1:2201411/50‑1 (MQ=255)
                tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc                             <  1:7290443/50‑1 (MQ=255)
                 gagtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCg                            >  1:1177019/1‑50 (MQ=255)
                 gagtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCg                            >  1:7110625/1‑50 (MQ=255)
                  agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCg                            <  1:3276466/49‑1 (MQ=255)
                   gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc                          >  1:4166433/1‑50 (MQ=255)
                   gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc                          >  1:8158318/1‑50 (MQ=255)
                   gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc                          <  1:5301978/50‑1 (MQ=255)
                    tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc                         >  1:5369890/1‑50 (MQ=255)
                    tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc                         >  1:6356838/1‑50 (MQ=255)
                    tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc                         <  1:1155803/50‑1 (MQ=255)
                    tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc                         >  1:8310487/1‑50 (MQ=255)
                      agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        >  1:6911703/1‑49 (MQ=255)
                      agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        >  1:1675555/1‑49 (MQ=255)
                      agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        >  1:5919087/1‑49 (MQ=255)
                      agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        >  1:255511/1‑49 (MQ=255)
                      agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        <  1:4018918/49‑1 (MQ=255)
                      agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        >  1:4299662/1‑49 (MQ=255)
                      agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                        >  1:4423559/1‑49 (MQ=255)
                       gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                      <  1:4286828/50‑1 (MQ=255)
                       gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                      <  1:5586146/50‑1 (MQ=255)
                       gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                      <  1:7759121/50‑1 (MQ=255)
                        tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     >  1:4730891/1‑50 (MQ=255)
                        tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     >  1:7637950/1‑50 (MQ=255)
                        tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     <  1:1319191/50‑1 (MQ=255)
                         cTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                     >  1:6696556/1‑49 (MQ=255)
                          tGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   >  1:8508899/1‑50 (MQ=255)
                           gCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   >  1:6207329/1‑49 (MQ=255)
                           gCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   >  1:4677544/1‑49 (MQ=255)
                            cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAtt                    <  1:6354924/47‑1 (MQ=255)
                            cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACa                 <  1:3015025/50‑1 (MQ=255)
                             aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                   >  1:946889/1‑47 (MQ=255)
                              aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa               <  1:5592484/50‑1 (MQ=255)
                               aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc              >  1:337296/1‑50 (MQ=255)
                               aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc              <  1:5753722/50‑1 (MQ=255)
                               aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc              >  1:8503062/1‑50 (MQ=255)
                               aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc              >  1:7777914/1‑50 (MQ=255)
                               aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc              <  1:7463913/50‑1 (MQ=255)
                                aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt             <  1:3292291/50‑1 (MQ=255)
                                 aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt             >  1:659901/1‑49 (MQ=255)
                                 aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt             >  1:2345237/1‑49 (MQ=255)
                                 aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt             >  1:8064354/1‑49 (MQ=255)
                                    tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca         <  1:5625115/50‑1 (MQ=255)
                                    tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac          >  1:1690108/1‑49 (MQ=255)
                                    tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac          >  1:4253717/1‑49 (MQ=255)
                                     gAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa        >  1:3170647/1‑50 (MQ=255)
                                     gAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa        >  1:7763685/1‑50 (MQ=255)
                                      aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa        <  1:4930351/49‑1 (MQ=255)
                                      aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa        <  1:6261646/49‑1 (MQ=255)
                                      aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  1:4501914/1‑50 (MQ=255)
                                      aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  1:2624805/1‑50 (MQ=255)
                                      aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       <  1:8381412/50‑1 (MQ=255)
                                      aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  1:1631916/1‑50 (MQ=255)
                                       aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc      <  1:937240/50‑1 (MQ=255)
                                       aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  1:6015983/1‑49 (MQ=255)
                                       aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  1:5038578/1‑49 (MQ=255)
                                       aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc       >  1:7026245/1‑49 (MQ=255)
                                        aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca     >  1:7645255/1‑50 (MQ=255)
                                        aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca     >  1:1972373/1‑50 (MQ=255)
                                         ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac    <  1:4326358/50‑1 (MQ=255)
                                          tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca   >  1:4635891/1‑50 (MQ=255)
                                          tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca   >  1:6829201/1‑50 (MQ=255)
                                          tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca   >  1:875900/1‑50 (MQ=255)
                                           gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca   <  1:8388242/49‑1 (MQ=255)
                                           gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat  >  1:7941505/1‑50 (MQ=255)
                                           gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat  >  1:3746302/1‑50 (MQ=255)
                                           gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat  >  1:593717/1‑50 (MQ=255)
                                           gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat  >  1:6559324/1‑50 (MQ=255)
                                           gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat  >  1:1559903/1‑50 (MQ=255)
                                              |                                              
TAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACAT  >  NC_000913/12040‑12132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑