BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,697,216	T→C	intergenic (‑164/+57)	uidR ← / ← hdhA	DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,697,216	0	T	C	100.0%	435.6 / NA	107	intergenic (‑164/+57)	uidR/hdhA	DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (53/54); total (53/54)

Only 100 of 107 total aligned reads displayed.

GTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTC  >  NC_000913/1697170‑1697262

gTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtga                                             >  1:4520065/1‑50 (MQ=255)

gTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtg                                              <  1:8262151/49‑1 (MQ=255)

 ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  1:3190431/1‑50 (MQ=255)

  tAACGAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  1:4853329/1‑49 (MQ=255)

  tAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  1:3212584/1‑49 (MQ=255)

  tAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  1:7848886/1‑49 (MQ=255)

   aaCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatg                                           <  1:3528486/49‑1 (MQ=255)

   aaCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat                                            >  1:684821/1‑48 (MQ=255)

    aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatga                                          <  1:2218235/49‑1 (MQ=255)

    aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg                                         <  1:6059281/50‑1 (MQ=255)

    aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg                                         >  1:2404090/1‑50 (MQ=255)

    aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg                                         <  1:7372593/50‑1 (MQ=255)

    aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg                                         <  1:7351884/50‑1 (MQ=255)

     ccAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGt                                        >  1:3547968/1‑50 (MQ=255)

      cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt                                       >  1:5537175/1‑50 (MQ=255)

      cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt                                       >  1:3012295/1‑50 (MQ=255)

        aTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTa                                     >  1:5818012/1‑50 (MQ=255)

        aTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTa                                     <  1:7647550/50‑1 (MQ=255)

         tAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTAt                                    >  1:1851603/1‑50 (MQ=255)

         tAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTAt                                    <  1:8090368/50‑1 (MQ=255)

         tAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTAt                                    <  1:5978837/50‑1 (MQ=255)

          aGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATc                                   >  1:3389805/1‑50 (MQ=255)

           gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATcc                                  <  1:2036715/50‑1 (MQ=255)

            ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc                                 <  1:2179763/50‑1 (MQ=255)

            ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc                                 >  1:2011402/1‑50 (MQ=255)

            ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc                                 <  1:1378677/50‑1 (MQ=255)

              gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               <  1:1049376/50‑1 (MQ=255)

              gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               >  1:3186364/1‑50 (MQ=255)

               tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               >  1:6330939/1‑49 (MQ=255)

               tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               >  1:2068003/1‑49 (MQ=255)

               tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg                               >  1:825150/1‑49 (MQ=255)

               tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGt                              <  1:4159541/50‑1 (MQ=255)

                gATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGt                              >  1:3703285/1‑49 (MQ=255)

                 aTTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaa                            <  1:4061453/50‑1 (MQ=255)

                 aTTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTa                             <  1:2738649/49‑1 (MQ=255)

                 aTTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTa                             <  1:6957642/49‑1 (MQ=255)

                  tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa                           >  1:5975058/1‑50 (MQ=255)

                  tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa                           <  1:5742892/50‑1 (MQ=255)

                  tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa                           >  1:7409934/1‑50 (MQ=255)

                    tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          <  1:7191198/49‑1 (MQ=255)

                    tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          >  1:4351423/1‑49 (MQ=255)

                    tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          <  1:2804638/49‑1 (MQ=255)

                    tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac                          <  1:3343378/49‑1 (MQ=255)

                     ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        >  1:1112891/1‑50 (MQ=255)

                      gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaac                       <  1:5420605/50‑1 (MQ=255)

                      gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa                        <  1:1388655/49‑1 (MQ=255)

                       cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAacaaca                      <  1:5336625/50‑1 (MQ=255)

                       cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAacaaca                      >  1:1239147/1‑50 (MQ=255)

                        tGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac                     >  1:10029/1‑50 (MQ=255)

                        tGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac                     >  1:5367089/1‑50 (MQ=255)

                        tGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac                     >  1:8093721/1‑50 (MQ=255)

                         gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    >  1:4383131/1‑50 (MQ=255)

                          ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac                     <  1:3286560/48‑1 (MQ=255)

                          ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac                     <  1:2566263/48‑1 (MQ=255)

                          ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    >  1:5478094/1‑49 (MQ=255)

                          ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    <  1:3521097/49‑1 (MQ=255)

                          ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    >  1:6524478/1‑49 (MQ=255)

                          ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg                    <  1:8313689/49‑1 (MQ=255)

                            aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac                 >  1:6514960/1‑50 (MQ=255)

                            aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac                 <  1:7728325/50‑1 (MQ=255)

                            aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac                 >  1:6544688/1‑50 (MQ=255)

                            aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac                 >  1:1636854/1‑50 (MQ=255)

                             gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg                <  1:497766/50‑1 (MQ=255)

                             gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg                <  1:1273675/50‑1 (MQ=255)

                             gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg                >  1:4040941/1‑50 (MQ=255)

                             gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg                >  1:8129170/1‑50 (MQ=255)

                             gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg                >  1:3226343/1‑50 (MQ=255)

                              ttATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACgg               >  1:5890016/1‑50 (MQ=255)

                                aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt             >  1:3215242/1‑50 (MQ=255)

                                aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt             >  1:3708195/1‑50 (MQ=255)

                                aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt             >  1:370930/1‑50 (MQ=255)

                                 tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttg            >  1:2205385/1‑50 (MQ=255)

                                 tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttg            >  1:7996066/1‑50 (MQ=255)

                                   tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt          >  1:2276102/1‑50 (MQ=255)

                                   tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt           <  1:8047102/49‑1 (MQ=255)

                                   tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt           <  1:3928669/49‑1 (MQ=255)

                                    aGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt          <  1:4634251/49‑1 (MQ=255)

                                    aGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt          <  1:4473770/49‑1 (MQ=255)

                                    aGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt          >  1:3618136/1‑49 (MQ=255)

                                     gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGttt         <  1:424845/49‑1 (MQ=255)

                                     gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa        <  1:7289203/50‑1 (MQ=255)

                                     gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa        <  1:5981105/50‑1 (MQ=255)

                                     gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa        >  1:2305791/1‑50 (MQ=255)

                                     gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa        <  1:6880286/50‑1 (MQ=255)

                                       agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc      >  1:8516565/1‑50 (MQ=255)

                                       agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc      >  1:1311273/1‑50 (MQ=255)

                                        gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg     <  1:5512602/50‑1 (MQ=255)

                                        gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg     <  1:5447510/50‑1 (MQ=255)

                                        gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg     <  1:3931317/50‑1 (MQ=255)

                                        gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg     <  1:8194259/50‑1 (MQ=255)

                                        gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg     <  1:674992/50‑1 (MQ=255)

                                         agaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCgg    <  1:6715680/50‑1 (MQ=255)

                                         agaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCgg    <  1:251133/50‑1 (MQ=255)

                                         agaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCgg    >  1:4352216/1‑50 (MQ=255)

                                         agaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCgg    <  1:3803236/50‑1 (MQ=255)

                                          gaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGt   <  1:3506886/50‑1 (MQ=255)

                                          gaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGt   >  1:3705498/1‑50 (MQ=255)

                                          gaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGt   <  1:1061667/50‑1 (MQ=255)

                                          gaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGt   <  1:1058962/50‑1 (MQ=255)

                                           aCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTc  <  1:8430013/50‑1 (MQ=255)

GTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTC  >  NC_000913/1697170‑1697262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`