BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,090,282	C→T	intergenic (+30/‑65)	yggI → / → endA	conserved protein YggI/DNA‑specific endonuclease I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,090,282	0	C	T	100.0%	488.3 / NA	123	intergenic (+30/‑65)	yggI/endA	conserved protein YggI/DNA‑specific endonuclease I
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (58/65); total (58/65)

Only 100 of 123 total aligned reads displayed.

CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328

cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              >  1:2292193/1‑50 (MQ=255)

 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             >  1:2501887/1‑50 (MQ=255)

  gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc                                            >  1:4828197/1‑50 (MQ=255)

   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  1:4363589/1‑50 (MQ=255)

   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:2377441/50‑1 (MQ=255)

   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  1:8451527/1‑50 (MQ=255)

   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:600318/50‑1 (MQ=255)

      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                         <  1:5033071/49‑1 (MQ=255)

      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        <  1:8206166/50‑1 (MQ=255)

         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:1437792/1‑49 (MQ=255)

         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:2197444/1‑49 (MQ=255)

          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                     <  1:7075269/49‑1 (MQ=255)

          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                     <  1:1484436/49‑1 (MQ=255)

          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                     <  1:7249391/49‑1 (MQ=255)

          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                     <  1:5933469/49‑1 (MQ=255)

          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:1447705/1‑50 (MQ=255)

          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:5039475/1‑50 (MQ=255)

           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:117869/1‑49 (MQ=255)

           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:8402884/1‑49 (MQ=255)

           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:1525972/1‑49 (MQ=255)

           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt                                   <  1:1624440/50‑1 (MQ=255)

           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt                                   <  1:6814941/50‑1 (MQ=255)

            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  >  1:867144/1‑50 (MQ=255)

             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:84873/1‑50 (MQ=255)

             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 <  1:5830096/50‑1 (MQ=255)

             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:5547732/1‑50 (MQ=255)

             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:5658783/1‑50 (MQ=255)

             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:2425748/1‑50 (MQ=255)

             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:6262971/1‑50 (MQ=255)

             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 <  1:6263613/50‑1 (MQ=255)

              aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                <  1:2096289/50‑1 (MQ=255)

              aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:3001825/1‑49 (MQ=255)

              aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:4780321/1‑49 (MQ=255)

               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  1:1037681/1‑49 (MQ=255)

               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  1:5189693/1‑49 (MQ=255)

               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  1:6426944/1‑49 (MQ=255)

               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               <  1:405427/50‑1 (MQ=255)

                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaa                             <  1:5904039/50‑1 (MQ=255)

                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                              >  1:2823455/1‑49 (MQ=255)

                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:6278873/1‑50 (MQ=255)

                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:4402362/1‑50 (MQ=255)

                   cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:376577/1‑49 (MQ=255)

                   cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:6635894/1‑49 (MQ=255)

                   cATCCGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc                           <  1:4033546/50‑1 (MQ=255)

                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACa                          <  1:4251573/50‑1 (MQ=255)

                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACa                          <  1:4081184/50‑1 (MQ=255)

                     tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         >  1:1889040/1‑50 (MQ=255)

                     tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         >  1:3900827/1‑50 (MQ=255)

                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        >  1:1651354/1‑50 (MQ=255)

                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        >  1:364069/1‑50 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         <  1:7104260/46‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         <  1:6434829/46‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     <  1:4571494/50‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     <  1:3857194/50‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      <  1:7863323/49‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      <  1:6243691/49‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                       <  1:7884815/48‑1 (MQ=255)

                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:1970304/50‑1 (MQ=255)

                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    >  1:4941365/1‑50 (MQ=255)

                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   <  1:3717331/50‑1 (MQ=255)

                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   <  1:8606985/50‑1 (MQ=255)

                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:1761929/1‑50 (MQ=255)

                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:7441873/1‑50 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  <  1:7774320/48‑1 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCt                 <  1:6502552/49‑1 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCt                 <  1:2685771/49‑1 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa                >  1:5884702/1‑50 (MQ=255)

                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  1:1133083/1‑50 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  1:4924562/49‑1 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  1:372836/49‑1 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  1:2037153/49‑1 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  1:4540755/49‑1 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              >  1:4745450/1‑50 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              <  1:4379824/50‑1 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              <  1:1894775/50‑1 (MQ=255)

                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             <  1:676768/50‑1 (MQ=255)

                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             <  1:8198860/50‑1 (MQ=255)

                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             <  1:344375/50‑1 (MQ=255)

                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             <  1:7590592/50‑1 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           <  1:1405023/50‑1 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           >  1:4350571/1‑50 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           <  1:1691061/50‑1 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           >  1:2880980/1‑50 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           <  1:4283168/50‑1 (MQ=255)

                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          >  1:2167596/1‑50 (MQ=255)

                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          >  1:2247961/1‑50 (MQ=255)

                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        >  1:1072644/1‑50 (MQ=255)

                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       <  1:1060486/49‑1 (MQ=255)

                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       <  1:613817/49‑1 (MQ=255)

                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       <  1:6004989/49‑1 (MQ=255)

                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       <  1:415692/49‑1 (MQ=255)

                                         ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      <  1:5002502/49‑1 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt     <  1:4536662/49‑1 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    >  1:5818312/1‑50 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    <  1:8285685/50‑1 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    <  1:1993740/50‑1 (MQ=255)

                                           tGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg   >  1:3489040/1‑50 (MQ=255)

                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:7991405/1‑50 (MQ=255)

                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:5653613/1‑50 (MQ=255)

                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:3654012/1‑50 (MQ=255)

CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`