Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,829,233	C→A	L97M (CTG→ATG)	xanP →	xanthine:H(+) symporter XanP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,829,233	0	C	A	100.0%	356.0 / NA	92	L97M (CTG→ATG)	xanP	xanthine:H(+) symporter XanP
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (42/50);  total (42/50)

TGGCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGCTGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAT  >  NC_000913/3829186‑3829279                                                |                                               tgGCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtg                                              >  1:3668379/1‑50 (MQ=255) tgGCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtg                                              >  1:3110995/1‑50 (MQ=255)   gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgt                                             <  1:4177014/49‑1 (MQ=255)   gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgt                                             <  1:4016394/49‑1 (MQ=255)   gCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgt                                             <  1:6332925/49‑1 (MQ=255)    cATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgttg                                           >  1:2468741/1‑50 (MQ=255)     aTCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgttgt                                          >  1:720919/1‑50 (MQ=255)     aTCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgttgt                                          >  1:716694/1‑50 (MQ=255)      tCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         <  1:1926990/50‑1 (MQ=255)      tCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         >  1:6111104/1‑50 (MQ=255)      tCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         >  1:3018350/1‑50 (MQ=255)       cGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         >  1:5647407/1‑49 (MQ=255)       cGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         >  1:2170120/1‑49 (MQ=255)       cGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                         >  1:6887318/1‑49 (MQ=255)        gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCt                                        <  1:7668206/49‑1 (MQ=255)        gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCt                                        <  1:8509037/49‑1 (MQ=255)        gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTa                                       >  1:6800713/1‑50 (MQ=255)        gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTa                                       >  1:205477/1‑50 (MQ=255)        gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTa                                       <  1:5176874/50‑1 (MQ=255)         attattCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTAt                                      <  1:2981967/50‑1 (MQ=255)         attattCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTAt                                      >  1:1060218/1‑50 (MQ=255)             ttCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAg                                  <  1:967616/50‑1 (MQ=255)               cAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAgg                                 <  1:5175618/49‑1 (MQ=255)                aaaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGc                               <  1:3286821/50‑1 (MQ=255)                 aaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCa                              >  1:4513544/1‑50 (MQ=255)                 aaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCa                              >  1:1514133/1‑50 (MQ=255)                  aTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAc                             >  1:2283892/1‑50 (MQ=255)                  aTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAc                             <  1:551871/50‑1 (MQ=255)                   ttAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAcc                            <  1:2248266/50‑1 (MQ=255)                   ttAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAc                             >  1:4487396/1‑49 (MQ=255)                   ttAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAc                             >  1:1824216/1‑49 (MQ=255)                     aaGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAg                          >  1:3977651/1‑50 (MQ=255)                      aGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAg                          <  1:205952/49‑1 (MQ=255)                       ggCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCt                        <  1:2543886/50‑1 (MQ=255)                        gCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt                       >  1:6014505/1‑50 (MQ=255)                        gCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt                       <  1:830318/50‑1 (MQ=255)                         ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt                       >  1:7865733/1‑49 (MQ=255)                         ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                      <  1:3652708/50‑1 (MQ=255)                         ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                      <  1:2035727/50‑1 (MQ=255)                         ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                      <  1:7511380/50‑1 (MQ=255)                         ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                      <  1:7352461/50‑1 (MQ=255)                          cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCa                     <  1:1250294/50‑1 (MQ=255)                          cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCa                     <  1:4967886/50‑1 (MQ=255)                           tGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCaa                    >  1:1124252/1‑50 (MQ=255)                           tGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCaa                    >  1:2797881/1‑50 (MQ=255)                           tGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCaa                    >  1:3351310/1‑50 (MQ=255)                           tGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCaa                    >  1:1391600/1‑50 (MQ=255)                            ggggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAAc                   >  1:901375/1‑50 (MQ=255)                             gggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAAc                   <  1:2399559/49‑1 (MQ=255)                             gggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACt                  <  1:7268398/50‑1 (MQ=255)                             gggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACt                  <  1:7576863/50‑1 (MQ=255)                              ggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACtt                 >  1:5993317/1‑50 (MQ=255)                               gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt                <  1:6783024/50‑1 (MQ=255)                               gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt                <  1:3363046/50‑1 (MQ=255)                               gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt                <  1:5761445/50‑1 (MQ=255)                                tCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttg               <  1:8439314/50‑1 (MQ=255)                                 ccGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgt              >  1:7811562/1‑50 (MQ=255)                                  cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgtt             <  1:7369460/50‑1 (MQ=255)                                  cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgtt             >  1:3919211/1‑50 (MQ=255)                                  cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgtt             <  1:8466933/50‑1 (MQ=255)                                  cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgtt             <  1:4408362/50‑1 (MQ=255)                                  cGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgt              <  1:6646545/49‑1 (MQ=255)                                   ggTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTTAACTttgttg            >  1:4438204/1‑50 (MQ=255)                                   ggTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgttg            <  1:5678257/50‑1 (MQ=255)                                   ggTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgttg            >  1:7284293/1‑50 (MQ=255)                                   ggTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgttg            >  1:4170146/1‑50 (MQ=255)                                   ggTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTttgttg            >  1:4363472/1‑50 (MQ=255)                                    gTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGc           >  1:8378607/1‑50 (MQ=255)                                    gTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGc           <  1:7449701/50‑1 (MQ=255)                                    gTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGc           <  1:5614924/50‑1 (MQ=255)                                     ttGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGcc          <  1:4497347/50‑1 (MQ=255)                                     ttGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGcc          >  1:765307/1‑50 (MQ=255)                                     ttGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGcc          <  1:4928570/50‑1 (MQ=255)                                      tGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGccc         >  1:7583149/1‑50 (MQ=255)                                       ggCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGcccc        >  1:1343894/1‑50 (MQ=255)                                       ggCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGcccc        >  1:4099787/1‑50 (MQ=255)                                       ggCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGccc         <  1:3146616/49‑1 (MQ=255)                                        gCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCg       <  1:5870363/50‑1 (MQ=255)                                         cTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGc      <  1:2712222/50‑1 (MQ=255)                                         cTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGc      <  1:1386308/50‑1 (MQ=255)                                         cTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGc      <  1:3187993/50‑1 (MQ=255)                                           ccGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt     >  1:2695323/1‑49 (MQ=255)                                            cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt     <  1:4856540/48‑1 (MQ=255)                                            cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt     <  1:5161248/48‑1 (MQ=255)                                            cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt     <  1:6436763/48‑1 (MQ=255)                                            cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTg    <  1:3528546/49‑1 (MQ=255)                                            cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTg    <  1:2894391/49‑1 (MQ=255)                                            cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGa   >  1:8285055/1‑50 (MQ=255)                                            cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGa   >  1:6424569/1‑50 (MQ=255)                                            cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGa   >  1:2568922/1‑50 (MQ=255)                                             gggATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAt  <  1:1956369/50‑1 (MQ=255)                                             gggATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAt  <  1:3730455/50‑1 (MQ=255)                                                |                                               TGGCATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGCTGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCTGAT  >  NC_000913/3829186‑3829279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑