BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,093,223	A→G	V72V (GTT→GTC)	rhaM ←	L‑rhamnose mutarotase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,093,223	0	A	G	100.0%	416.5 / NA	103	V72V (GTT→GTC)	rhaM	L‑rhamnose mutarotase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (46/57); total (46/57)

Only 100 of 103 total aligned reads displayed.

GGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATC  >  NC_000913/4093176‑4093268

gggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc                                             <  1:804167/50‑1 (MQ=255)

gggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc                                             <  1:2281415/50‑1 (MQ=255)

   ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                           >  1:4836836/1‑49 (MQ=255)

   ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc                                          <  1:8533761/50‑1 (MQ=255)

   ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc                                          <  1:1213274/50‑1 (MQ=255)

    tAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                           >  1:6255948/1‑48 (MQ=255)

     aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCa                                         <  1:6379923/49‑1 (MQ=255)

     aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg                                        >  1:655925/1‑50 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg                                        <  1:110506/49‑1 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg                                        <  1:2066995/49‑1 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg                                        <  1:1053271/49‑1 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt                                       <  1:3232023/50‑1 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt                                       <  1:2060021/50‑1 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt                                       <  1:1783834/50‑1 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt                                       >  1:5323800/1‑50 (MQ=255)

        gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc                                     <  1:7630113/50‑1 (MQ=255)

        gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc                                     >  1:760245/1‑50 (MQ=255)

         ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt                                    <  1:4681111/50‑1 (MQ=255)

         ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt                                    <  1:7613180/50‑1 (MQ=255)

         ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt                                    >  1:7883077/1‑50 (MQ=255)

          gCATAACATCGGTCATATTTTTCCACCAACGTTGGCAGACATCAGTGCTg                                   <  1:1535462/50‑1 (MQ=39)

          gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg                                   >  1:6771700/1‑50 (MQ=255)

          gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg                                   <  1:6447786/50‑1 (MQ=255)

          gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg                                   >  1:5277792/1‑50 (MQ=255)

           cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg                                  >  1:7436791/1‑50 (MQ=255)

           cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg                                  <  1:2871077/50‑1 (MQ=255)

           cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg                                  >  1:2955265/1‑50 (MQ=255)

            aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg                                  >  1:6469971/1‑49 (MQ=255)

            aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg                                  >  1:5587650/1‑49 (MQ=255)

             tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc                                 >  1:6648275/1‑49 (MQ=255)

             tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCa                                <  1:6555589/50‑1 (MQ=255)

              aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa                               >  1:8502508/1‑50 (MQ=255)

              aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa                               >  1:5204463/1‑50 (MQ=255)

               aCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAc                              <  1:3099883/50‑1 (MQ=255)

                cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc                             >  1:7637334/1‑50 (MQ=255)

                cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc                             >  1:2027114/1‑50 (MQ=255)

                cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc                             <  1:5253820/50‑1 (MQ=255)

                  tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGc                           <  1:4774842/50‑1 (MQ=255)

                    ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt                         <  1:3650810/50‑1 (MQ=255)

                    ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt                         <  1:4028578/50‑1 (MQ=255)

                    ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt                         >  1:4398090/1‑50 (MQ=255)

                    ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt                         >  1:5142578/1‑50 (MQ=255)

                     gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt                        <  1:1906104/50‑1 (MQ=255)

                     gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt                        <  1:5271141/50‑1 (MQ=255)

                     gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAtt                        <  1:5269549/50‑1 (MQ=255)

                      tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc                       <  1:2559001/50‑1 (MQ=255)

                      tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc                       >  1:3732120/1‑50 (MQ=255)

                      tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc                       <  1:692482/50‑1 (MQ=255)

                      tCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc                       <  1:4516582/50‑1 (MQ=255)

                       cATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc                       >  1:7403113/1‑49 (MQ=255)

                        atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTcc                      <  1:762488/49‑1 (MQ=255)

                         tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg                    >  1:4938057/1‑50 (MQ=255)

                         tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg                    <  1:5623860/50‑1 (MQ=255)

                          atatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc                   >  1:3772464/1‑50 (MQ=255)

                          atatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc                   >  1:6725045/1‑50 (MQ=255)

                           tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCGACCGCATTCCAGc                   <  1:3962299/49‑1 (MQ=39)

                           tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc                   <  1:3758060/49‑1 (MQ=255)

                             tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt                >  1:7779014/1‑50 (MQ=255)

                             tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGt                 <  1:2349789/49‑1 (MQ=255)

                             tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGt                 <  1:6697830/49‑1 (MQ=255)

                              ttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc               >  1:7264837/1‑50 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct              >  1:8493247/1‑50 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc               <  1:5039886/49‑1 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc               <  1:1591081/49‑1 (MQ=255)

                                ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct              <  1:8172284/49‑1 (MQ=255)

                                 caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc            <  1:8001036/50‑1 (MQ=255)

                                 caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc            <  1:21949/50‑1 (MQ=255)

                                 caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt             <  1:64970/49‑1 (MQ=255)

                                  accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt             >  1:7922047/1‑48 (MQ=255)

                                  accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt             >  1:5417619/1‑48 (MQ=255)

                                  accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa           <  1:7901511/50‑1 (MQ=255)

                                  accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa           <  1:7781494/50‑1 (MQ=255)

                                  accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa           <  1:1631449/50‑1 (MQ=255)

                                   ccaACGTTGGCAGACATCAGTGCTGGCGACCGCATTCCAGCGTTCTTCAg          <  1:3480120/50‑1 (MQ=255)

                                   ccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAg          <  1:282452/50‑1 (MQ=255)

                                   ccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAg          <  1:4385245/50‑1 (MQ=255)

                                    caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt             >  1:5628471/1‑46 (MQ=255)

                                    caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt             >  1:6706232/1‑46 (MQ=255)

                                     aaCGTTGGCAGACATCAGTGTTGGCAACCGCATTCCAGCGTTCTTCAGAt        >  1:152437/1‑50 (MQ=39)

                                     aaCGTTGGCAGACATCAGTGCTGGTAACCGCATTCCAGCGTTCTTCAGAt        >  1:7933107/1‑50 (MQ=255)

                                      aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt       >  1:1219561/1‑50 (MQ=255)

                                      aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt       <  1:183846/50‑1 (MQ=255)

                                      aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt       <  1:195850/50‑1 (MQ=255)

                                      aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt       >  1:3031287/1‑50 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt       >  1:4363964/1‑49 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt       >  1:4358283/1‑49 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc      <  1:1354539/50‑1 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc      <  1:7429848/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc      >  1:6834386/1‑49 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc      >  1:6086157/1‑49 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc      >  1:6957030/1‑49 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc      >  1:3363224/1‑49 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc      >  1:6897150/1‑49 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa     <  1:589281/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa     <  1:7475986/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa     <  1:431789/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa     <  1:3004516/50‑1 (MQ=255)

                                           ggCAGACATCAGTGCTGGCGACCGCATTCCAGCGTTCTTCAGATTCAAt   <  1:2390048/49‑1 (MQ=39)

                                           ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc  >  1:6107456/1‑50 (MQ=255)

                                           ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt   <  1:5809390/49‑1 (MQ=255)

GGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATC  >  NC_000913/4093176‑4093268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`