| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,400,314 | Δ1 bp | coding (1460/1527 nt) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,400,314 | 0 | A | . | 90.6% | 367.9 / 44.6 | 96 | coding (1460/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base A (7/2); new base . (44/43); total (51/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.10e-04 | |||||||||||
ATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGAC > NC_000913/1400266‑1400354 | aTACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGGAACATcag < 2:3848194/50‑1 (MQ=255) ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa > 2:258689/1‑50 (MQ=255) ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa < 2:3339179/50‑1 (MQ=255) ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa < 1:445862/50‑1 (MQ=255) ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa < 1:4325640/50‑1 (MQ=255) ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa > 2:580038/1‑50 (MQ=255) ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa > 2:3895545/1‑50 (MQ=255) cGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGcc < 2:5385607/50‑1 (MQ=255) cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa > 2:356908/1‑49 (MQ=38) cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt < 2:909699/50‑1 (MQ=255) cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt < 2:371024/50‑1 (MQ=255) cGGACCTATCGGCAGACCGAAAAGATCCCACGCCAGC‑ACATC‑GCAGCCAt < 2:3517880/50‑1 (MQ=25) gACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCa > 1:1477675/1‑49 (MQ=255) gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 2:1475188/1‑50 (MQ=255) gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac < 1:4247199/50‑1 (MQ=255) aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 1:393225/1‑49 (MQ=38) aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 2:3835844/1‑49 (MQ=38) ccTATCGGCGGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtg < 2:5104904‑M1/50‑3 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCCGCCATACtat > 2:5215530‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 1:2550098‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 2:3514038‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:1836900‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 2:1488310‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 1:2740692‑M1/1‑47 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 2:725151‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 2:3663864‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:1513384‑M1/1‑46 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 2:524827‑M1/1‑45 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:4468845‑M1/1‑45 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATaccac > 1:1998121/1‑49 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgca < 2:2992384‑M1/50‑7 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 2:4024954‑M1/48‑5 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 2:1116333‑M1/48‑5 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 2:4152716‑M1/48‑5 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACAGC‑GCAGCCATACtatgca < 2:2276548‑M1/50‑7 (MQ=255) cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:4490945‑M1/1‑43 (MQ=255) ggCAGACCGACAAGGTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag < 2:3603924‑M1/49‑8 (MQ=255) ggCAGACCGACAAGATACCGCGCCAGCAACATCAGCAGCCATAcaacca < 1:1745060/49‑1 (MQ=39) gCAGACCGACAAGATACCTCGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 1:757698‑M1/50‑10 (MQ=255) gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 2:1817558‑M1/50‑10 (MQ=255) cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa < 1:3520184‑M1/50‑11 (MQ=255) aGACTGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 2:235366‑M1/1‑39 (MQ=255) aGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaaa > 1:4240752/1‑48 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac < 2:2484021‑M1/50‑12 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 2:3942373‑M1/1‑39 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:3447053‑M1/1‑39 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca < 2:1317150‑M1/50‑13 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac > 2:1419719‑M1/1‑38 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac > 1:2300411‑M1/1‑38 (MQ=255) aCCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaaa > 2:3698422/1‑46 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:1017874‑M1/50‑15 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:3608696‑M1/50‑15 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat > 2:2247009‑M1/1‑36 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 1:3375119‑M1/50‑16 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:656151‑M1/1‑35 (MQ=255) gACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGAt > 1:4864632/1‑48 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:4183500‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:675691‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCAAACtatgcagaaacaatgc > 2:4174205‑M1/1‑34 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 1:545740‑M1/50‑18 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct > 1:1956669‑M1/1‑33 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 2:1592199‑M1/50‑18 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 1:906676‑M1/50‑19 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 2:1114170‑M1/50‑19 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 1:4520028‑M1/50‑19 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 2:3568443‑M1/1‑32 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 2:2874351‑M1/1‑32 (MQ=255) aaGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTg > 1:5141539/1‑50 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 2:3373286‑M1/1‑31 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt < 2:2350279‑M1/50‑20 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 2:3673665‑M1/1‑31 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 2:4453298‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 2:2952782‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 1:4089028‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc > 1:5384981‑M1/1‑30 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:2395287‑M1/50‑22 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga > 2:3374714‑M1/1‑28 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga < 1:4388648‑M1/50‑23 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat > 2:547668‑M1/1‑27 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:2648631‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:4700600‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:3940079‑M1/50‑24 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg > 1:3735321‑M1/1‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg > 2:2878171‑M1/1‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:5012823‑M1/49‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:2046190‑M1/49‑25 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:3963888‑M1/1‑24 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgctggcc > 2:621842‑M1/1‑23 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 1:1985658‑M1/1‑23 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 2:1316140‑M1/1‑23 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct < 2:797130‑M1/50‑28 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 2:4273631‑M1/50‑29 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg > 2:3815355‑M1/1‑22 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc < 2:2652381‑M1/50‑30 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 2:212463‑M1/1‑21 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 1:1066729‑M1/1‑21 (MQ=255) gCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGAc > 1:4312849/1‑49 (MQ=255) | ATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGAC > NC_000913/1400266‑1400354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |