| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,756,138 | Δ1 bp | intergenic (+183/‑21) | ssrA → / → intA | tmRNA/CP4‑57 prophage; integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,756,137 | 0 | C | . | 88.6% | 480.2 / 66.0 | 123 | intergenic (+182/‑22) | ssrA/intA | tmRNA/CP4‑57 prophage; integrase |
| Reads supporting (aligned to +/- strand): ref base C (8/6); new base . (55/54); total (63/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Only 100 of 135 total aligned reads displayed.
TTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACT > NC_000913/2756089‑2756185 | ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGc > 1:1157994/1‑49 (MQ=255)ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGc > 2:1793842/1‑49 (MQ=255)ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGc > 2:3475224/1‑49 (MQ=255)ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGc < 1:1937547/49‑1 (MQ=255) tAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGct > 1:4729146/1‑48 (MQ=255) tAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGct > 2:4909082/1‑48 (MQ=255) tAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGct > 1:669076/1‑48 (MQ=255) tAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGct < 2:1847346/49‑2 (MQ=255) tAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGct > 1:1882005/1‑48 (MQ=255) aGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGcta > 2:3265113/1‑47 (MQ=255) aGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCt > 2:2559054/1‑49 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAAc > 1:5084526/1‑50 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg > 1:3700899/1‑50 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg < 1:1969422/50‑1 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg < 2:232419/50‑1 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg < 1:421861/50‑1 (MQ=255) ccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg > 1:179576/1‑49 (MQ=255) cATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg > 1:3303981/1‑48 (MQ=255) cATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACg > 2:1887861/1‑48 (MQ=255) aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg > 1:4486796/1‑48 (MQ=255) aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAg < 1:324201/50‑1 (MQ=255) aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAg > 1:2432360/1‑50 (MQ=255) aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAg > 2:3863476/1‑50 (MQ=255) aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAg < 2:1562377/50‑1 (MQ=255) aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAg < 2:46059/50‑1 (MQ=255) ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg > 2:1021486/1‑50 (MQ=255) ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg < 2:4089556/50‑1 (MQ=255) ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg < 1:5182857/50‑1 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg > 2:798845/1‑49 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg > 2:2431220/1‑49 (MQ=255) gATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAggg < 1:3638328/49‑1 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAgg > 1:1864727/1‑47 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGga < 2:129805/49‑1 (MQ=255) aGGCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGAc > 1:1579300/1‑50 (MQ=255) ggCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGAc < 1:3829087/49‑1 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTc < 1:1115441/50‑1 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTccc < 2:735958/50‑1 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTccc < 2:2941472/50‑1 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTccc > 1:2470093/1‑50 (MQ=255) cAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTccc > 1:483782/1‑50 (MQ=255) cAACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTccc > 1:1849723/1‑49 (MQ=255) aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 2:860616‑M1/1‑50 (MQ=255) aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:1047864‑M1/50‑1 (MQ=255) aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 2:4536377‑M1/1‑50 (MQ=255) aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:14458‑M1/50‑1 (MQ=255) aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 2:3395196‑M1/1‑50 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 2:4196361‑M1/50‑2 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:2094557‑M1/1‑48 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 2:1561178‑M1/50‑3 (MQ=255) cGAAAAGCTCTATTGTTTACGTCGGG‑CTAAACGCAGGGAGACTCCCCAcc > 2:3423376‑M1/1‑48 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:4072192‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:2969949‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:2760853‑M1/50‑4 (MQ=255) aaaaGTTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:4841930‑M1/50‑5 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:897800‑M1/50‑5 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 2:4187221‑M1/50‑5 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:478730‑M1/1‑46 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:679807‑M1/50‑6 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:5072478‑M1/1‑45 (MQ=255) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 2:4598057‑M1/1‑44 (MQ=255) aGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCaa < 1:4871058/50‑1 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:2899495‑M1/50‑8 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:1243266‑M1/50‑9 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga > 1:4736270‑M1/1‑42 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga > 1:4663328‑M1/1‑42 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 2:4729923‑M1/50‑10 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:4459740‑M1/1‑41 (MQ=255) tctATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGa > 2:4939522/1‑49 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 2:3478096‑M1/1‑40 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:2104374‑M1/1‑38 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:1734357‑M1/1‑38 (MQ=255) ttGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaa < 2:842642/47‑1 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 2:2157080‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 2:581703‑M1/1‑36 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 2:2134139‑M1/48‑13 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 2:2754093‑M1/48‑13 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:2624056‑M1/1‑34 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCTcctttgaaaacaggat < 2:4354265‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:4032939‑M1/50‑18 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:4264143‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:2901833‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:1670943‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 2:150967‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:3159643‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggac < 2:2876345‑M1/49‑17 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 2:3798900‑M1/49‑19 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:2495381‑M1/1‑31 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:89477‑M1/49‑20 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:1639938‑M1/1‑29 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 2:287554‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:1394479‑M1/1‑29 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:918749‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 2:507646‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtag < 1:1507130‑M1/49‑21 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 2:5164411‑M1/1‑28 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 2:5071393‑M1/1‑28 (MQ=255) ttGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcga > 1:360646‑M1/1‑27 (MQ=255) ttGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcga < 1:690882‑M1/50‑24 (MQ=255) gCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACt < 1:2736790/50‑1 (MQ=255) gCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACt > 1:1598521/1‑50 (MQ=255) | TTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACT > NC_000913/2756089‑2756185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |