| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 765,191 | Δ1 bp | coding (685/723 nt) | mngR ← | DNA‑binding transcriptional repressor MngR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 765,189 | 0 | T | . | 82.4% | 252.0 / 88.1 | 91 | coding (687/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| Reads supporting (aligned to +/- strand): ref base T (3/13); new base . (29/46); total (32/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
Only 100 of 109 total aligned reads displayed.
GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCG > NC_000913/765140‑765236 | gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt < 2:913502/50‑1 (MQ=255)gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt < 2:5254034/50‑1 (MQ=255)gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt > 2:5142415/1‑50 (MQ=255)gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt > 2:2599589/1‑50 (MQ=255)gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt < 2:1793515/50‑1 (MQ=255)gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt < 2:1793083/50‑1 (MQ=255)gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt < 2:1309105/50‑1 (MQ=255)gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt > 1:4343330/1‑50 (MQ=255) cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta < 1:3619930/50‑2 (MQ=255) ttttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta > 2:422810/1‑48 (MQ=255) tttttGTGCTTATCGCGATGATTTTCGCTGCGATATCAGGGTAAAtta > 2:4037054/1‑47 (MQ=255) ttttGTGCTTATCGCGATGGTTTTCGCTGCGCTATCAGGGTAAAttat < 2:2704461/48‑3 (MQ=39) ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat < 1:1090129/48‑3 (MQ=255) ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat < 2:3831062/48‑3 (MQ=255) ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat < 1:5334359/48‑3 (MQ=255) ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat < 1:5115432/48‑3 (MQ=255) tttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTtata < 1:1137738/49‑1 (MQ=255) tgtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTc < 2:3069894/49‑1 (MQ=38) gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCa < 2:1958829/49‑1 (MQ=38) gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt > 2:1375390/1‑50 (MQ=39) gtgCTTATCGCGATGATTTTCGCTGCGCTAACAGGGTAAATTTATAGTc < 2:5324750/49‑1 (MQ=255) tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCa < 1:5247183/49‑1 (MQ=255) tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt < 2:4029010/49‑1 (MQ=38) tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt < 2:2078049/49‑1 (MQ=38) gCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg > 1:1962503/1‑50 (MQ=39) cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 2:474694/1‑50 (MQ=39) cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 2:4234366/1‑50 (MQ=39) cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg < 1:1275961/49‑1 (MQ=38) ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 1:4392276/1‑49 (MQ=38) ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 1:4673575/1‑49 (MQ=38) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCgg < 1:1049470/48‑1 (MQ=255) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt < 1:375808/48‑1 (MQ=38) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt < 1:128683/48‑1 (MQ=38) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt < 2:1063762/48‑1 (MQ=38) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa < 2:1995147/49‑1 (MQ=38) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa < 2:2314889/49‑1 (MQ=38) cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 2:3945704‑M1/1‑50 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTAtt > 1:91230/1‑49 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTAtt < 2:514271/49‑1 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 2:4780994‑M1/50‑2 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 2:3650199‑M1/50‑2 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTaa < 1:2303395/50‑1 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta < 2:5231648‑M1/50‑3 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2188649‑M1/1‑48 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:1387731‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:4825703‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 2:4393641‑M1/1‑47 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 1:397957‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 2:3002770‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:3559305‑M1/1‑46 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 2:4897504‑M1/1‑46 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:4475992‑M1/50‑6 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc > 1:4925428‑M1/1‑45 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:3543593‑M1/50‑8 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 2:2541662‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:775808‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa < 2:3347625‑M1/49‑7 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 2:4588166‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 2:3495905‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:3523259‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 2:379399‑M1/1‑42 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 1:1357982‑M1/49‑10 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 2:3354263‑M1/49‑10 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 1:3526918‑M1/49‑10 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 2:4748594‑M1/49‑12 (MQ=255) gCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCgg < 1:3603862/50‑1 (MQ=255) gCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCg < 2:2925980/49‑1 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcactcaaacc > 2:2430549‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 2:1171760‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 2:3841123‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 2:2055733‑M1/1‑37 (MQ=255) cTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGc > 2:238981/1‑50 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg < 2:2992549‑M1/50‑15 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg < 1:3457863‑M1/50‑15 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 2:1549312‑M1/1‑36 (MQ=255) tGCGCTATCAGGGTAAA‑TTATAGTCATCGGAATTAtagcaaccaaaccg > 2:5159126‑M1/1‑35 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag < 1:3561591‑M1/50‑18 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa < 2:4428842‑M1/49‑17 (MQ=255) gcTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCtata < 1:4273422/50‑1 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 2:4076041‑M1/1‑32 (MQ=255) cTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTatat < 1:3788652/50‑1 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:4342823‑M1/1‑30 (MQ=255) tCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCa < 2:3657897/50‑1 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:2294611‑M1/1‑28 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccac < 2:731837‑M1/49‑22 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca < 2:744856‑M1/48‑21 (MQ=255) aGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCaaa > 2:4107824/1‑50 (MQ=255) aGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCaaa < 2:102408/50‑1 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata < 2:3351217‑M1/50‑25 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata > 2:487379‑M1/1‑26 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata < 2:185872‑M1/50‑25 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat < 2:415631‑M1/49‑24 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat > 1:604775‑M1/1‑25 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 2:899586‑M1/50‑26 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg > 2:1685014‑M1/1‑24 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg < 1:2008474‑M1/50‑27 (MQ=255) ggTAAA‑TTATAGTCAGCGGTATTAtagcaatcaaaccgaagccacatatg < 2:4115342‑M1/50‑27 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 2:5089365‑M1/50‑28 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 2:2561702‑M1/50‑28 (MQ=255) aaTTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCg < 1:5201604/50‑1 (MQ=255) | GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCG > NC_000913/765140‑765236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |