New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3593298107 (0.980)9 (0.110)
+CCCCGCCCCGT		 7/76 9.1 9.3% coding (140/714 nt) livF branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF
?NC_000913 = 3638023 122 (1.110)coding (382/1500 nt) pitA metal phosphate:H(+) symporter PitA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3593250‑3593298
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCGCCAATCAGCGTAT  <  NC_000913/3638023‑3638006
                                                 |||||||||||                  
ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAC                              >  1:5183957/1‑50
 CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC                             >  1:2053590/1‑50
   ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC                           >  1:3584939/1‑50
   ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC                           <  1:4608784/50‑1
    TTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCG                          >  2:4758286/1‑50
     TCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGC                         >  2:4476450/1‑50
      CGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGC                         <  1:1977552/49‑1
         CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG                     >  2:4073166/1‑50
          CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGT                    >  2:4936833/1‑50
           GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT                   >  1:3590456/1‑50
            CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC                  <  2:2982832/50‑1
            CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC                  <  2:3421652/50‑1
             TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG                 >  2:1307695/1‑50
                  GCACGCGGATCGCCGCATAACGTGCCGAGCCCCCCGCCCCGTTCGCGCCA            <  2:2641752/50‑1
                    ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT          >  2:2319618/1‑50
                          ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT    >  1:3809864/1‑50
                          ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT    <  1:1124688/50‑1
                             GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTga  >  1:7476/1‑47
                                                 |||||||||||                  
ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3593250‑3593298
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCGCCAATCAGCGTAT  <  NC_000913/3638023‑3638006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.