| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 150 (1.370) | 25 (0.240) | 20/94 | 5.2 | 14.8% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 144 (1.370) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 156 total aligned reads displayed.
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400239‑4400337 | cAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGaa > 2:38647/1‑50 (MQ=255) aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAt < 1:856875/50‑1 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATGAGCATATAAGGAAAAGAGAGAATg < 1:1643504/50‑1 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATg < 1:3227855/50‑1 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATg > 2:4220193/1‑50 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATg < 1:5188131/50‑1 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATg < 2:3812339/50‑1 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATgg < 1:69053/50‑1 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATgg > 1:2070820/1‑50 (MQ=255) aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg > 2:4043532/1‑49 (MQ=255) tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGc > 2:538061/1‑49 (MQ=255) tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt < 1:1841907/50‑1 (MQ=255) tCGAAAGGTTCAAAGTAAAAATAAGCATATAAGGAACAGAGAGAATGGc > 2:1405911/1‑49 (MQ=39) cGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 1:1742576/1‑49 (MQ=255) cGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 2:2526040/1‑49 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 1:1587785/1‑48 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 2:1032570/1‑48 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 1:1228331/1‑48 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTa < 1:1499463/49‑1 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAg < 1:169806/50‑1 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAg > 2:1910158/1‑50 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAg < 1:19909/50‑1 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAgg > 2:1289469/1‑50 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAgg < 1:4903391/50‑1 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAgg < 1:463443/50‑1 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAgg > 2:949534/1‑50 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAggg > 2:3811249/1‑50 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAggg < 2:574439/50‑1 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAgggg > 1:4485694/1‑49 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc < 2:1554920/50‑1 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc < 2:4796316/50‑1 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc > 1:4675909/1‑49 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt > 1:1023253/1‑50 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt < 2:1210314/49‑1 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt < 1:1159516/49‑1 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATc > 1:2889155/1‑50 (MQ=255) aaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCt > 1:1069964/1‑50 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCttt < 2:4109969/50‑1 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCttt < 2:164822/50‑1 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCttt < 2:499088/50‑1 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCttt < 1:50857/50‑1 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCtt > 1:2176075/1‑49 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa < 1:4362345/50‑1 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa < 2:4328080/50‑1 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 1:1867914/1‑50 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 1:4920709/1‑50 (MQ=255) aCAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 1:4013333/1‑49 (MQ=255) aCAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 1:5329978/1‑49 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc < 1:2656660/49‑1 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 2:4545406/1‑49 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:2387773/1‑48 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACaa < 1:309391/50‑1 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAG‑‑‑‑‑‑‑AAGGGGCAATCTTTACAAGATCCGt > 1:1415959/1‑50 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:1921927/1‑47 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAg < 2:4343725/50‑1 (MQ=255) tAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:348781/1‑45 (MQ=255) tAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGAt < 2:3991817/50‑1 (MQ=255) aaGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc > 2:3681998/1‑50 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATcc < 2:5009255/50‑1 (MQ=255) aGCAGATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc < 2:807609/49‑1 (MQ=255) gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCg < 2:3295044/50‑1 (MQ=255) gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCg < 2:4086663/50‑1 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGt > 1:4476095/1‑50 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGt > 1:1382043/1‑50 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt < 2:2167860/50‑1 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt < 2:5267559/50‑1 (MQ=255) atatAAGGAAAAGAGAGAAAGGCTAAGGGGCAATCTTTACAAGATCCGtt > 2:4112859/1‑50 (MQ=255) tataAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTc > 2:5167146/1‑50 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt < 2:57855/50‑1 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 2:4426240/1‑50 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt < 2:4561646/50‑1 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 2:2851789/1‑49 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 1:1278538/1‑49 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 2:3921948/1‑49 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 1:4081394/1‑49 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTg > 2:4811887/1‑49 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGa < 2:1046142/50‑1 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTACTg < 1:3464158/49‑1 (MQ=255) ggAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGaa > 2:2454416/1‑50 (MQ=255) gAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAAc < 2:3620394/50‑1 (MQ=255) aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg < 2:203484/50‑1 (MQ=255) aaaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2542666/1‑50 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 2:4209518/1‑49 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 2:82135/1‑49 (MQ=255) aaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa > 1:1148544/1‑50 (MQ=255) agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc > 2:895177/1‑50 (MQ=255) agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc > 1:2128190/1‑50 (MQ=255) agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc < 1:4820925/50‑1 (MQ=255) gagagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 1:2547084/50‑1 (MQ=255) gagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc < 1:3045120/50‑1 (MQ=255) gagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc > 1:4136179/1‑50 (MQ=255) gagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc > 1:2100322/1‑50 (MQ=255) gagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc > 2:2222017/1‑50 (MQ=255) gaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt < 2:779359/50‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 2:2059529/50‑1 (MQ=255) aaTGGCTAAGGGGCAATCTGTACAAGATCCGTTCCTGAACGCACTGCGTc < 2:1517127/50‑1 (MQ=255) aTGGCTAAGGGGCAATCTTTATAAGATCCGTTCCTGAACGCACTGCGTCg > 1:2346198/1‑50 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:3931673/1‑50 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:3282173/1‑50 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg < 2:3356563/50‑1 (MQ=255) | CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400239‑4400337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |