| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 4 (0.040) | 8 (0.110) | 7/66 | 7.8 | 81.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 1 (0.010) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCC > NC_000913/1209577‑1209661 | ccGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt > 1:3168974/1‑49 (MQ=255) cTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg < 2:2379284/48‑1 (MQ=255) tctcCCAAACCAACGTTTATTAAAATGAAGAAATAACAAGCAAATGGcat > 1:2106359/1‑50 (MQ=255) cccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 2:5045192/1‑50 (MQ=255) ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:882251/49‑1 (MQ=255) ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 2:2020731/49‑1 (MQ=255) ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 2:1204757/50‑1 (MQ=255) aaaCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 2:1459532/50‑1 (MQ=255) | CCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCC > NC_000913/1209577‑1209661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |