| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,562,085 | 0 | C | T | 37.5% | 116.5 / 145.2 | 120 | A133T (GCA→ACA) | ddpA | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (31/44); new base T (22/23); total (53/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.45e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 124 total aligned reads displayed.
TTCACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGTTTT > NC_000913/1562036‑1562134 | ttCACCGTATGTTCGTCGGGAGCATCAAACTTTAAATCTTTGGGAAATGc > 2:1194719/1‑50 (MQ=255) cACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGttt > 2:3583618/1‑50 (MQ=255) cACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCtt > 2:4303535/1‑50 (MQ=255) cACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCtt > 1:4380166/1‑50 (MQ=255) cACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCtt > 1:4860533/1‑50 (MQ=255) aCCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGttt < 2:4309275/49‑1 (MQ=255) aCCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCtt < 1:1925859/49‑1 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTct > 2:2703718/1‑50 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTct > 1:5263168/1‑50 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTct < 1:4379064/50‑1 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTct > 1:1266520/1‑50 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTct < 2:1199937/50‑1 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTct > 1:3528208/1‑50 (MQ=255) cGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTctg < 2:3768376/50‑1 (MQ=255) gTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgc > 2:1610177/1‑50 (MQ=255) gTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTctgc > 2:2825554/1‑50 (MQ=255) tATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgct < 2:3023305/50‑1 (MQ=255) tATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTctgct > 2:2701276/1‑50 (MQ=255) aTGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgctg > 1:2581706/1‑50 (MQ=255) tGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTctgctg < 2:1781786/49‑1 (MQ=255) tGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTctgctg < 2:1529427/49‑1 (MQ=255) tGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTgg > 2:4770135/1‑50 (MQ=255) ttCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGcc < 1:2538716/50‑1 (MQ=255) ttCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGc < 2:1031439/49‑1 (MQ=255) ttCGTCGGGAGCAACAATCTTTAAATCTTTGTGAAATGCTTCTGCTGGcc < 2:3853180/50‑1 (MQ=255) cgtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGccc < 2:4603345/49‑1 (MQ=255) cgtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGccc < 1:2314287/49‑1 (MQ=255) cgtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGccc < 2:4533310/49‑1 (MQ=255) cgtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGccc < 2:2923132/49‑1 (MQ=255) gtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCt < 2:1282963/50‑1 (MQ=255) gtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCt < 2:4980748/50‑1 (MQ=255) gtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCt < 2:4783327/50‑1 (MQ=255) gtcgGGAGCATCAATCTTTAAATCGTTGGGAAATGCTTCTGCTGGCCCCt < 2:3008012/50‑1 (MQ=255) gtcgGGAGCATCAATCTATAAATCTTTGGGAAATGCTTCTGCTGGCCCCt < 2:401310/50‑1 (MQ=255) cgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTgg > 1:4517438/1‑50 (MQ=255) cgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTgg > 2:3436324/1‑50 (MQ=255) cgGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTgg > 1:1198593/1‑50 (MQ=255) cgGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTgg > 2:1008586/1‑50 (MQ=255) gggAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTgg < 1:2276626/49‑1 (MQ=255) gggAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGc > 2:2077970/1‑50 (MQ=255) gggAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCAgg < 2:4071575/49‑1 (MQ=255) gggAGCATCAAACTTTAAATCCTTGGGAAATGCTTCTGCTGGCCCCTgg < 1:4623524/49‑1 (MQ=255) ggAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGcc < 2:5343422/50‑1 (MQ=255) ggAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGcc > 1:1637956/1‑50 (MQ=255) gAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCg < 1:3172755/50‑1 (MQ=255) gAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCg < 2:4340368/50‑1 (MQ=255) gAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGcc > 2:2860697/1‑49 (MQ=255) gAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGcc > 1:1491153/1‑49 (MQ=255) gAGCATCAAGCTTTAAAGCATTGGGAAATGCTTCTGCTGGCCCCTGGCCg < 1:2436326/50‑1 (MQ=255) gCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAt < 1:1133227/50‑1 (MQ=255) gCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAt > 2:767336/1‑50 (MQ=255) gCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAt < 1:2155730/50‑1 (MQ=255) gCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAt > 1:60224/1‑50 (MQ=255) cATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAtt < 2:3171436/50‑1 (MQ=255) cATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGAtt < 2:4694356/50‑1 (MQ=255) aTCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAttt > 2:4048383/1‑50 (MQ=255) tCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGAtttt < 2:1001564/50‑1 (MQ=255) cAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAtttt > 2:5153419/1‑49 (MQ=255) aaTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAttttt < 2:4526984/49‑1 (MQ=255) aaTCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTta < 1:3606125/50‑1 (MQ=255) aaTCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTta < 1:200773/50‑1 (MQ=255) aTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtag > 1:723842/1‑50 (MQ=255) aTCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTtag > 1:260401/1‑50 (MQ=255) cTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTtag > 2:5245723/1‑48 (MQ=255) tttAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagtag > 2:2834236/1‑50 (MQ=255) tttAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagtag > 2:710702/1‑50 (MQ=255) tttAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTtagtag > 2:4974460/1‑50 (MQ=255) tAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGcc > 2:4549216/1‑50 (MQ=255) tAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTtagt < 1:860611/46‑1 (MQ=255) tAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTtagt < 2:3657371/46‑1 (MQ=255) tAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGcc > 1:4625223/1‑50 (MQ=255) aaaTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGcc < 2:2541222/49‑1 (MQ=255) aaaTCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGcc < 2:1178489/49‑1 (MQ=255) aaaTCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCg > 2:338933/1‑50 (MQ=255) aTCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt < 1:4498196/50‑1 (MQ=255) aTCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt < 1:931050/50‑1 (MQ=255) aTCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt > 1:981609/1‑50 (MQ=255) aTCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt < 1:3584818/50‑1 (MQ=255) aTCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt < 1:3307755/50‑1 (MQ=255) tttGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCa > 2:3932144/1‑49 (MQ=255) ttGGGAAATGTTTCTGCTGGCCCCTGGCCGCTTTTTAGTAGCCGCTCaa > 1:2581530/1‑49 (MQ=255) tGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTc < 1:4213888/46‑1 (MQ=255) tGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCa < 2:1407446/47‑1 (MQ=255) tGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaaa < 2:3301403/49‑1 (MQ=255) tGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaa < 2:1714844/48‑1 (MQ=255) gggAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaaaa < 2:4837843/49‑1 (MQ=255) gggAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaa > 1:3381801/1‑47 (MQ=255) gggAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaa > 1:3305056/1‑47 (MQ=255) ggAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaag > 1:1878870/1‑49 (MQ=255) ggAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaag > 1:2073027/1‑49 (MQ=255) ggAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaaga < 2:5358442/50‑1 (MQ=255) aaaTGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaaga > 2:1942397/1‑48 (MQ=255) aaaTGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaaa < 1:5113933/50‑1 (MQ=255) aaTGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaaag > 1:4353090/1‑50 (MQ=255) aaTGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaaag < 1:3806279/50‑1 (MQ=255) aaTGCTTCTGCTAGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaaag < 2:2277736/50‑1 (MQ=255) aTGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGt < 2:4378946/50‑1 (MQ=255) aTGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGt > 1:4950158/1‑50 (MQ=255) gCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGttt > 1:4618661/1‑50 (MQ=255) cTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGtttt < 2:348381/50‑1 (MQ=255) | TTCACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGTTTT > NC_000913/1562036‑1562134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |