| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,875,050 | 1 | . | C | 35.0% | 135.3 / 143.4 | 80 | coding (527/822 nt) | nimR | DNA‑binding transcriptional repressor NimR |
| Reads supporting (aligned to +/- strand): ref base . (30/22); new base C (14/14); total (44/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.54e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 106 total aligned reads displayed.
GGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGG > NC_000913/1875001‑1875097 | ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATg > 1:5139671/1‑50 (MQ=255)cgCAAGATTGCGTTCACTCATCGCATAAAAGCCAGCCCATTGCCCCAATg > 2:4730854/2‑50 (MQ=255) gCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 1:5364855/1‑50 (MQ=255) gCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 2:294482/1‑50 (MQ=255) gCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 1:1801578/1‑50 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cc > 2:4119776/1‑50 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cc < 1:623730/50‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cc < 2:3952755/50‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cc > 2:5049654/1‑50 (MQ=255) aaGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑ccc > 1:48866/1‑50 (MQ=255) aaGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑ccc > 2:2612781/1‑50 (MQ=255) aaGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑ccc < 1:4924069/50‑1 (MQ=255) aaGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑ccc > 1:5080011/1‑50 (MQ=255) aaGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑ccc > 2:4665159/1‑50 (MQ=255) aaGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑ccc > 1:1824668/1‑50 (MQ=255) aGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc > 1:2364275/1‑50 (MQ=255) aGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc > 1:2951734/1‑50 (MQ=255) aGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc > 1:3119939/1‑50 (MQ=255) aGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc > 2:211414/1‑50 (MQ=255) aGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc < 1:3893380/50‑1 (MQ=255) aTTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccccc > 2:4523976/1‑50 (MQ=255) aTTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑ccccc > 2:247486/1‑49 (MQ=255) ttGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑ccccccc < 1:3687366/50‑2 (MQ=255) ttGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccccc > 1:1747393/1‑49 (MQ=255) cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTc < 1:1153718/50‑1 (MQ=255) cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTc > 2:1355766/1‑50 (MQ=255) cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTc > 1:3140635/1‑50 (MQ=255) ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGa > 1:4600041/1‑50 (MQ=255) tCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGa > 1:3001768/1‑49 (MQ=255) cACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGa > 2:4522780/1‑48 (MQ=255) cACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACGCGAc < 2:4133579/49‑1 (MQ=255) aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCCCACTCGa > 1:3821083/1‑48 (MQ=38) aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACa < 1:1384167/49‑1 (MQ=255) aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAg < 2:612923/50‑1 (MQ=255) cTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAgg > 1:1192222/1‑50 (MQ=255) tCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGc > 1:4215849/1‑50 (MQ=255) aTCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACAGGcc > 2:3159100/1‑50 (MQ=39) aTCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGccc > 2:2580864/1‑50 (MQ=255) aTCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGcc < 1:657611/49‑1 (MQ=255) tCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACAGGccc < 2:1434993/50‑1 (MQ=39) tCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCt > 2:2719555/1‑50 (MQ=255) gCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCttt < 2:5318586/50‑1 (MQ=255) gCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCtt < 2:4426979/49‑1 (MQ=255) gCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCtt < 1:3047341/49‑1 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACAGGCCCttt > 2:680822/1‑50 (MQ=39) cAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTc < 2:3440007/50‑1 (MQ=255) aaaaaaGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTc < 1:1839304/50‑1 (MQ=39) aaaaaaGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCg > 1:3498369/1‑50 (MQ=255) aaaaaaGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCg < 1:3242084/50‑1 (MQ=255) aaaaaGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGc < 1:1798300/50‑1 (MQ=255) aaaaGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACATGCCCTTACGc > 2:3729280/1‑50 (MQ=37) aaaaGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGc > 2:544327/1‑50 (MQ=39) aaaaGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGc > 1:3858866/1‑50 (MQ=39) aaaaGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGc > 2:3883683/1‑49 (MQ=255) aaaGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGc > 2:610400/1‑49 (MQ=38) cagccagccCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGCca > 2:3166215/2‑50 (MQ=38) aaGCCAGCCCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGCca > 2:501443/1‑50 (MQ=39) aaGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCcat < 1:3591690/50‑1 (MQ=255) agccagccCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGCcat < 2:1376074/50‑1 (MQ=39) agccagccCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGCcat < 1:1677225/50‑1 (MQ=39) agccagccCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCcat > 1:3916820/1‑49 (MQ=255) gccagccCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGccct > 2:3910152/1‑47 (MQ=38) gccagccCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCcatca < 2:4896085/50‑1 (MQ=255) cagccCATTGCCTCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCatcatc > 2:2765465/1‑50 (MQ=255) cagccCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCatcatc > 1:5223824/1‑50 (MQ=255) agccCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCAtct < 2:1756189/50‑1 (MQ=255) agccCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCAtct > 2:3889516/1‑50 (MQ=255) gccCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCAtct < 2:4751386/50‑1 (MQ=39) gccCATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCAtct < 2:2901984/50‑1 (MQ=39) cccATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCAtctc < 1:5280387/50‑1 (MQ=39) cccATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCAtctc > 1:1042631/1‑49 (MQ=255) ccATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTcca > 1:3365702/1‑50 (MQ=255) cATTGCCCCAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCATCTcca > 2:4318290/1‑50 (MQ=255) cATTGCCCCAATGCCCCCCCACCCGACAGGCCCTTTCGCCATCAGCTcca < 2:2185124/50‑1 (MQ=255) cATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTccac > 1:429169/1‑50 (MQ=255) cATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTccac < 1:4675070/50‑1 (MQ=255) cATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTccac > 2:3975366/1‑50 (MQ=255) cATTGCCCCAATG‑CCCCCCACTCGAAAGCCCCTTTCGCCATCATCTccac > 1:3382948/1‑50 (MQ=39) aTTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTccac > 1:1926186/1‑49 (MQ=255) ttGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTccacca < 1:1837168/50‑1 (MQ=255) gCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCAt < 1:99302/49‑1 (MQ=255) ccccAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCAt < 1:2638020/49‑1 (MQ=39) ccccAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCAt < 1:3947320/49‑1 (MQ=39) ccccAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATc > 2:2472499/1‑50 (MQ=255) ccccAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATc < 1:3685583/50‑1 (MQ=255) ccccAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATc < 2:2877408/50‑1 (MQ=255) ccccAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATc > 2:5273884/1‑50 (MQ=255) ccccAATGCCCCCCCACTCGACAGGCCCTTGCGCCATCATCTCCACCATc < 1:2608966/50‑1 (MQ=255) ccccAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCg > 2:2581132/1‑50 (MQ=255) ccccAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCg < 1:3353648/50‑1 (MQ=255) ccccAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCg > 1:573005/1‑50 (MQ=255) ccccAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCg > 2:2834350/1‑50 (MQ=255) cccAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt < 2:3374483/50‑1 (MQ=255) ccAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg > 2:2804037/1‑50 (MQ=255) cAATGCCCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg < 2:1944259/50‑1 (MQ=255) aTG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCgg < 1:4095300/50‑1 (MQ=255) aTG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCgg > 2:4684115/1‑50 (MQ=255) aTG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCgg < 1:2615031/50‑1 (MQ=255) aTG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg > 1:4069282/1‑49 (MQ=255) aTG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCg > 2:4046680/1‑49 (MQ=255) | GGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCCCACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGG > NC_000913/1875001‑1875097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |