| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,955,693 | 0 | G | A | 31.7% | 157.0 / 99.3 | 104 | P439S (CCT→TCT) | torZ | trimethylamine N‑oxide reductase 2 |
| Reads supporting (aligned to +/- strand): ref base G (37/34); new base A (20/13); total (57/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 111 total aligned reads displayed.
ATATTCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCG > NC_000913/1955644‑1955742 | atatTCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAgg < 1:1502625/50‑1 (MQ=255) tatTCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGa > 1:4010195/1‑50 (MQ=255) tatTCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGa > 1:2001728/1‑50 (MQ=255) atTCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGAt > 2:4049744/1‑50 (MQ=255) atTCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAAt > 1:2780779/1‑50 (MQ=255) ttCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGAtt < 1:2527672/50‑1 (MQ=255) ttCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGAt < 1:4594935/49‑1 (MQ=255) ttCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAAtt < 2:315573/50‑1 (MQ=255) cGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGAtttt > 1:1344735/1‑50 (MQ=255) cGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGAttg < 2:2663697/49‑2 (MQ=255) cGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAAttt < 1:2310347/49‑1 (MQ=255) ggATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTc > 2:2176062/1‑50 (MQ=255) ggATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTc < 1:3566073/50‑1 (MQ=255) gATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTcc < 2:758132/50‑1 (MQ=255) gATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTc > 1:2227890/1‑49 (MQ=255) gATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTc > 2:3075793/1‑49 (MQ=255) aaTACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAACTTTcc < 2:5380479/49‑1 (MQ=255) tACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAg < 2:1992619/50‑1 (MQ=255) tACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAg > 2:1904647/1‑50 (MQ=255) tACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAg < 2:1218647/50‑1 (MQ=255) cGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAgcg > 2:724444/1‑50 (MQ=255) cGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAgc < 1:109576/49‑1 (MQ=255) gTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAgcgc < 1:2945504/50‑1 (MQ=255) gTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAgcg > 1:5299817/1‑49 (MQ=255) gTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAgcgc < 2:1145714/50‑1 (MQ=255) gTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAgcg > 1:1375432/1‑49 (MQ=255) tttGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCa > 2:3445664/1‑50 (MQ=255) ttGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCAt > 1:4286642/1‑50 (MQ=255) tGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCAt < 1:3827520/49‑1 (MQ=255) tGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCAt < 1:1010905/49‑1 (MQ=255) tGTTCTTTACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATc > 2:2599431/1‑50 (MQ=255) gTTCTTTACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATc > 1:3325445/1‑49 (MQ=255) ttCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATcga < 2:4002929/50‑1 (MQ=255) ttCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATcga > 1:3487904/1‑50 (MQ=255) ttCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATcga > 2:4026658/1‑50 (MQ=255) ttCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATcga < 1:2628121/50‑1 (MQ=255) ttCTTTACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATcga > 1:2951992/1‑50 (MQ=255) tCTTTACCGTTATGCTGATATTTTCCGCCAGAATTTTCCAGCGCATcgac > 1:4030545/1‑50 (MQ=255) tCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATcgac > 1:3629483/1‑50 (MQ=255) cTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATcgac > 2:1300336/1‑49 (MQ=255) tttACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATcgacga > 1:1588898/1‑50 (MQ=255) tACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATcgacg < 2:5135698/47‑1 (MQ=255) tACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATcgacg < 2:4234756/47‑1 (MQ=255) tACCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATa > 1:229587/1‑50 (MQ=255) aCCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATAc > 1:3959134/1‑50 (MQ=255) aCCGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATAc > 2:5249293/1‑50 (MQ=255) ccGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATAc < 1:2124572/49‑1 (MQ=255) ccGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATAc < 1:3513247/49‑1 (MQ=255) ccGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATAc < 2:2963589/49‑1 (MQ=255) cGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACgg < 2:3053783/50‑1 (MQ=255) cGTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACgg < 2:4412905/50‑1 (MQ=255) gTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACggg < 1:2864716/50‑1 (MQ=255) gTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACggg < 1:4234415/50‑1 (MQ=255) gTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACggg > 2:2245956/1‑50 (MQ=255) gTTATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACggg < 2:2761311/50‑1 (MQ=255) ttATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACggg > 1:2505039/1‑49 (MQ=255) ttATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACggg > 2:4910065/1‑49 (MQ=255) ttATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGc < 2:53104/50‑1 (MQ=255) ttATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACggg > 1:3215288/1‑49 (MQ=255) tATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGc > 1:3278911/1‑49 (MQ=255) tATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGc > 1:699618/1‑49 (MQ=255) tATGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACGGGc > 2:5113632/1‑49 (MQ=255) aTGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCaa > 2:2665321/1‑50 (MQ=255) aTGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCaa > 1:4865855/1‑50 (MQ=255) aTGCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACGGGCaa > 1:3723062/1‑50 (MQ=255) tGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCaa > 1:4137761/1‑49 (MQ=255) gCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACGGGCaa > 2:342087/1‑48 (MQ=255) gCTGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACGGGCaa > 2:4024134/1‑48 (MQ=255) cTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAg < 2:108579/50‑1 (MQ=255) cTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAg > 1:5236931/1‑50 (MQ=255) tGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAg > 2:3806921/1‑49 (MQ=255) tGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAg > 2:5276803/1‑49 (MQ=255) tGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAg > 1:4112959/1‑49 (MQ=255) tGATATTTGCCGCCAGAATTTTCCAGCGCATCGACGATACGGGCAACAg > 2:1464113/1‑49 (MQ=255) gATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAgg > 2:3888980/1‑49 (MQ=255) atatatGCCGACAGGATTTTCCAGCGCAGCGACGATACGGGCAACAGGaa < 2:2465509/50‑1 (MQ=38) atatTTGCCGCCAGGATTTTCCAGCGCATCGACGATAAGGGCAACAGGaa < 1:5301655/50‑1 (MQ=255) tatTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAAt < 1:1230306/50‑1 (MQ=255) atTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATc > 1:2834332/1‑50 (MQ=255) tttGCCGCCAGGATATTCCAGCGCATCGACGATACGGGCAACAGGAATCg < 2:5010477/50‑1 (MQ=255) tttGCCGCCAGAATTTTCCAGCGCATCGACGATACGGGCAACAGGAATc < 1:591042/49‑1 (MQ=255) tGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGc < 1:1888650/49‑1 (MQ=255) gccgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGcc < 2:4087164/49‑1 (MQ=255) ccgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCg < 1:5089597/49‑1 (MQ=255) ccgccAGAATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCg < 2:108981/49‑1 (MQ=255) cgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGt > 2:1986783/1‑49 (MQ=255) cgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGt > 1:1136774/1‑49 (MQ=255) cgccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTc < 2:3694428/50‑1 (MQ=255) cgccAGAATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGt > 1:2340665/1‑49 (MQ=255) gccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCa > 2:1469335/1‑50 (MQ=255) gccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCa > 1:2951741/1‑50 (MQ=255) ccAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCAt > 2:1370324/1‑50 (MQ=255) cAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCAtt < 1:305141/50‑1 (MQ=255) cAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCAtt < 1:2727649/50‑1 (MQ=255) aGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTc > 1:109443/1‑50 (MQ=255) ggATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTcc < 1:504961/50‑1 (MQ=255) ggATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTcc < 2:1232999/50‑1 (MQ=255) ggATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTcc > 2:1746276/1‑50 (MQ=255) gATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCg > 1:1579500/1‑50 (MQ=255) gATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCg > 2:2970099/1‑50 (MQ=255) | ATATTCGGATACGTTTGTTCTTTACCGTTATGCTGATATTTGCCGCCAGGATTTTCCAGCGCATCGACGATACGGGCAACAGGAATCGCCGTCATTCCG > NC_000913/1955644‑1955742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |