| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 12,086 | C→T | intergenic (‑300/‑77) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 12,086 | 0 | C | T | 81.9% | 312.9 / 67.6 | 127 | intergenic (‑300/‑77) | yaaI/dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Reads supporting (aligned to +/- strand): ref base C (12/11); new base T (56/48); total (68/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.37e-03 | |||||||||||
Only 100 of 127 total aligned reads displayed.
TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGA > NC_000913/12039‑12134 | tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg < 1:2796072/49‑1 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt > 2:4926434/1‑50 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt > 1:314469/1‑50 (MQ=255) tagtacTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt > 1:3671247/1‑50 (MQ=255) agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt > 2:1850430/1‑50 (MQ=255) agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGtt > 1:4594277/1‑50 (MQ=255) agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGt < 2:2186212/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt < 2:1998048/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGtt > 1:1775952/1‑49 (MQ=255) gtagtCAACCGCAATGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg < 1:2476055/50‑1 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg > 1:1851285/1‑49 (MQ=255) agtCAACCGCAGCGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa > 1:1234783/1‑49 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa > 1:4093068/1‑50 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaa < 1:4966201/49‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaa < 2:4146166/49‑1 (MQ=255) tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc > 2:1679472/1‑50 (MQ=255) tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAAc > 1:2774623/1‑50 (MQ=255) tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAAc < 1:1707136/50‑1 (MQ=255) cAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc > 2:195027/1‑49 (MQ=255) aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc > 2:449241/1‑48 (MQ=255) aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc > 2:500444/1‑48 (MQ=255) aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCa < 2:3201938/50‑1 (MQ=255) aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAg < 2:312673/50‑1 (MQ=255) aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAg < 2:4171097/50‑1 (MQ=255) ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa > 2:3794206/1‑50 (MQ=255) ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa < 1:5126581/50‑1 (MQ=255) ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa < 2:1653013/50‑1 (MQ=255) ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa < 2:3547567/50‑1 (MQ=255) cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc > 2:2502/1‑50 (MQ=255) cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc < 2:1107919/50‑1 (MQ=255) cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc < 2:3285370/50‑1 (MQ=255) cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGt > 1:1214462/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAATCCAGACGtt < 2:5188045/50‑1 (MQ=39) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt > 2:2640686/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt > 2:149946/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt > 1:810537/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt > 2:2744052/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt < 1:729137/50‑1 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt < 2:748293/50‑1 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt < 1:3267261/50‑1 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc > 1:442935/1‑50 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc < 1:3453920/50‑1 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTc > 1:660005/1‑50 (MQ=255) gagtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAACTCAGCCGTTTCg > 1:2318272/1‑50 (MQ=255) gagtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCg > 1:972224/1‑50 (MQ=255) agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCg < 1:4930563/49‑1 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc > 1:3398927/1‑50 (MQ=255) gagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc > 1:4282126/1‑50 (MQ=255) gagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc > 1:2298096/1‑50 (MQ=255) gagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc > 1:4567466/1‑50 (MQ=255) gagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc > 2:1459120/1‑50 (MQ=255) agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCt < 2:2130006/50‑1 (MQ=255) gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa > 1:5175425/1‑50 (MQ=255) gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa > 2:528560/1‑50 (MQ=255) gtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTa < 1:132931/50‑1 (MQ=255) tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt < 1:4018799/50‑1 (MQ=255) tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt < 1:3583750/50‑1 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAACCCAGACGTTTCGCCCCTATTACa < 2:4772781/50‑1 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAtt < 1:3647998/47‑1 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:274180/1‑48 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACa < 2:1501464/50‑1 (MQ=255) aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:1070263/1‑47 (MQ=255) aaaaaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAg < 2:1740060/50‑1 (MQ=255) aaaaaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAg < 1:2082731/50‑1 (MQ=255) aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa > 2:3533576/1‑50 (MQ=255) aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa < 1:2581958/50‑1 (MQ=255) aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa > 1:2149073/1‑50 (MQ=255) aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc > 2:5383171/1‑50 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 1:5160667/50‑1 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 1:3232989/1‑50 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 2:668837/1‑50 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 1:3122107/50‑1 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 1:3738733/50‑1 (MQ=255) aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTc < 1:1269385/50‑1 (MQ=255) aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTc < 1:5010741/50‑1 (MQ=255) aaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 2:3513107/1‑49 (MQ=255) aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 2:289450/1‑50 (MQ=255) aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 1:4129059/1‑50 (MQ=255) aaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 2:5172336/1‑50 (MQ=255) aTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 1:935878/1‑49 (MQ=255) aTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 1:3587316/1‑49 (MQ=255) gAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa > 1:3708210/1‑50 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa < 1:2397407/49‑1 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:746588/1‑50 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc < 2:2670786/50‑1 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:1876801/1‑50 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGATTCGCCCCTATTACAGACTCACAAc > 1:4466204/1‑50 (MQ=255) aaaTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:1141751/1‑50 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc < 1:3554758/50‑1 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:4333557/1‑49 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:5178389/1‑49 (MQ=255) aaTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc < 2:4287041/50‑1 (MQ=255) aaTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc < 2:2314683/50‑1 (MQ=255) aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca > 1:3946324/1‑50 (MQ=255) aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca > 1:3532731/1‑50 (MQ=255) aTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca < 2:3902823/50‑1 (MQ=255) tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca > 1:2775902/1‑50 (MQ=255) gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca < 2:3914842/49‑1 (MQ=255) gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat > 1:3795730/1‑50 (MQ=255) ggCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatg < 1:1526290/50‑1 (MQ=255) | TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGA > NC_000913/12039‑12134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |