| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,197,502 | C→T | G11R (GGA→AGA) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,197,502 | 0 | C | T | 100.0% | 31.2 / NA | 9 | G11R (GGA→AGA) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (2/7); total (2/7) | |||||||||||
GCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTT > NC_000913/1197457‑1197548 | gCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 2:121599/50‑1 (MQ=255) cATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCa > 1:4291022/1‑50 (MQ=255) tGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATtata < 1:4438912/50‑1 (MQ=255) ggTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGtt < 2:1325794/50‑1 (MQ=255) ttttGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCa < 1:3840193/50‑1 (MQ=255) tGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCAtt > 2:3105808/1‑49 (MQ=255) aGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTc < 2:3638648/48‑1 (MQ=255) ttAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGtt < 2:4202999/50‑1 (MQ=255) aCTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTAtt < 1:1941414/50‑1 (MQ=255) ctctGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTAttt > 2:1605371/1‑50 (MQ=255) | GCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTT > NC_000913/1197457‑1197548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |