| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,793,867 | C→A | A378D (GCT→GAT) | gabT → | 4‑aminobutyrate aminotransferase GabT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,793,867 | 0 | C | A | 75.7% | 209.8 / 77.4 | 107 | A378D (GCT→GAT) | gabT | 4‑aminobutyrate aminotransferase GabT |
| Reads supporting (aligned to +/- strand): ref base C (20/6); new base A (53/28); total (73/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.21e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
GACGGCGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTAT > NC_000913/2793818‑2793913 | gACGGCGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGc > 2:550356/1‑50 (MQ=255) cGGCGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATc < 2:3153690/50‑1 (MQ=255) ggCGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTcg > 1:560537/1‑50 (MQ=255) ggCGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATcg > 2:2568579/1‑50 (MQ=255) cGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTcgcg > 1:2536092/1‑50 (MQ=255) gATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCgcgc > 1:5078942/1‑50 (MQ=255) gATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCgcgc > 1:3449335/1‑50 (MQ=255) gATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCgcgc > 1:2921154/1‑50 (MQ=255) gATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCgagc > 2:3631220/1‑50 (MQ=255) gATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCgcgc > 1:569827/1‑50 (MQ=255) tCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGccc < 1:3808735/50‑1 (MQ=255) tCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGccc > 1:1972827/1‑50 (MQ=255) cacaACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCcg > 2:2746787/1‑50 (MQ=255) ccaacaaCCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCcgc < 2:143970/49‑1 (MQ=255) acaacaAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCcgc < 2:474534/50‑1 (MQ=255) acaacaAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCcgc > 2:3123958/1‑50 (MQ=255) acaacaAGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCcgc > 2:4753766/1‑50 (MQ=255) caacaaGCCGGACGCCAAACTCACTGCCGAGATCGTGGATCGCGCCcgc > 2:4699555/1‑49 (MQ=38) caacaaGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCcgc > 2:1128086/1‑49 (MQ=255) aacaaGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGa > 1:2725014/1‑50 (MQ=255) aacaaGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGa > 1:4834372/1‑50 (MQ=255) caaGCCGGGCGACAAACCCCCCGCCGAGATCGTGGATCGCGCCCGCGATa < 2:5321070/50‑1 (MQ=255) caaGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCGCGCCCGCGAt > 2:1773281/1‑49 (MQ=255) caaGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCGCGCCCGCGATa < 1:3931370/50‑1 (MQ=255) caaGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGAt > 2:2581268/1‑49 (MQ=255) caaGCCGAACGCCAAACTCACCGCCGAGATCGTGGCTCGCGCCCGCGATa < 1:1028884/50‑1 (MQ=255) caaGACGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATa < 1:3143887/50‑1 (MQ=255) aaGCCGGACGCCAAACTCGCCGCCGAGATCGTGGATCGCGCCCGCGATaa < 2:663155/50‑1 (MQ=255) aaGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATa > 2:1909399/1‑49 (MQ=255) aGCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATaaa < 1:1401715/50‑1 (MQ=255) gCCGGGCGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAg < 2:1444098/50‑1 (MQ=255) gCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAg > 1:4787892/1‑50 (MQ=255) gCCGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAg > 1:4840120/1‑50 (MQ=255) ccGGACGCCACACTCACCGCCGAGATCGTGGCTCGCGCCCCCGATAAAgg > 2:2029319/1‑50 (MQ=255) ccGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAgg > 1:3690070/1‑50 (MQ=255) cGGACGCCAAACTCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGc > 2:3850671/1‑50 (MQ=255) cGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGc > 1:2188917/1‑50 (MQ=255) cGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGc < 1:2050068/50‑1 (MQ=255) cGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGc > 2:3016370/1‑50 (MQ=255) cGGACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGc > 1:5324649/1‑50 (MQ=255) ggACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGcc < 1:4251728/50‑1 (MQ=255) ggACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGcc > 1:3233153/1‑50 (MQ=255) ggcGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCt < 2:281181/48‑1 (MQ=255) gACGCCAAACTCTCCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCt < 2:889203/50‑1 (MQ=39) gACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAACGGCCt > 1:3261165/1‑50 (MQ=255) gACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCt > 1:4949902/1‑50 (MQ=255) gACGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCt < 1:3749159/50‑1 (MQ=255) aCGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCt > 1:1818943/1‑49 (MQ=255) cGCCAAACTCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGa < 1:5145350/50‑1 (MQ=255) cGCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGa < 2:2580493/50‑1 (MQ=255) gCCAATCTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAt < 1:4906783/50‑1 (MQ=255) gCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAt > 2:3870081/1‑50 (MQ=255) gCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAt > 1:1997779/1‑50 (MQ=255) gCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAt < 2:5093674/50‑1 (MQ=255) gCCAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAt > 2:3067156/1‑50 (MQ=255) cAAACTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAttc > 1:2606561/1‑50 (MQ=255) aaaCTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAttct < 2:2896122/50‑1 (MQ=255) aaaCTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAttct > 2:4091585/1‑50 (MQ=255) aaCTCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGAttctt > 2:1571454/1‑50 (MQ=255) aaCTCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGAttctt > 1:2517109/1‑50 (MQ=255) aaCTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAttctt > 2:589305/1‑50 (MQ=255) aaCTAACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAttctt > 2:2686373/1‑50 (MQ=255) aCTCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGAttcttc > 1:4805836/1‑50 (MQ=255) aCTCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGAttcttc > 1:2042185/1‑50 (MQ=255) cTCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGATtcttct > 1:5246028/1‑50 (MQ=255) tCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGATtcttctt > 2:3268357/1‑49 (MQ=255) tCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTtctc > 2:762395/1‑50 (MQ=255) tCACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTtctc > 1:2454925/1‑50 (MQ=255) cACCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTtctct > 2:4906396/1‑50 (MQ=255) aCCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTtctctc < 1:1850921/50‑1 (MQ=255) aCCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTtctct < 2:1961568/49‑1 (MQ=255) aCCGCCGAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTtctct < 1:1328086/49‑1 (MQ=255) ccgccgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTcc > 1:4652088/1‑50 (MQ=255) ccgccgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTcc < 1:4699556/50‑1 (MQ=255) cgccgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCt > 2:3614605/1‑50 (MQ=255) gccgAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGATTTTTCTCTCCTg > 2:349047/1‑50 (MQ=255) gccgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTg < 2:2541870/50‑1 (MQ=255) gccgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTg > 2:5332555/1‑50 (MQ=255) gccgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTg > 2:3994872/1‑50 (MQ=255) ccgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGc > 2:1016523/1‑50 (MQ=255) ccgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGc > 1:174961/1‑50 (MQ=255) cgAGATCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCg < 2:4878685/50‑1 (MQ=255) gagaTCGTGGCTCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCgg > 2:3931999/1‑50 (MQ=255) gagaTCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCgg > 1:3243136/1‑50 (MQ=255) agaTCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGc > 2:2811446/1‑50 (MQ=255) agaTCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGc > 1:2128803/1‑50 (MQ=255) gaTCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGcc < 1:4155798/50‑1 (MQ=255) gaTCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGcc > 2:5142624/1‑50 (MQ=255) aTCGTGGCTCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGccc > 2:5323450/1‑50 (MQ=255) aTCGTGGCTCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGccc > 1:4129682/1‑50 (MQ=255) tCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCg > 1:1230571/1‑50 (MQ=255) tCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCg < 1:2236794/50‑1 (MQ=255) tCGTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCg > 2:5078866/1‑50 (MQ=255) agTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCg > 2:4576285/2‑49 (MQ=255) gTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGt < 1:2537367/49‑1 (MQ=255) gTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTa > 1:4354385/1‑50 (MQ=255) gTGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTa > 2:785449/1‑50 (MQ=255) tGGCTCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTAt > 2:3212802/1‑50 (MQ=255) tGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTAt > 1:450053/1‑50 (MQ=255) tGGATCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTAt > 1:56572/1‑50 (MQ=255) | GACGGCGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCGCGCCCGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTAT > NC_000913/2793818‑2793913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |