| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,090,282 | C→T | intergenic (+30/‑65) | yggI → / → endA | conserved protein YggI/DNA‑specific endonuclease I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,090,282 | 0 | C | T | 95.3% | 620.8 / 11.5 | 170 | intergenic (+30/‑65) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| Reads supporting (aligned to +/- strand): ref base C (5/3); new base T (72/90); total (77/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 170 total aligned reads displayed.
CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT > NC_000913/3090235‑3090328 | cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 2:2416221/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 2:2894018/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 1:909014/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 1:5035561/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 2:4356369/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 1:2755300/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg > 1:2332532/1‑50 (MQ=255) aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg > 1:1238449/1‑50 (MQ=255) aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg > 2:190512/1‑50 (MQ=255) aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg < 1:2554279/50‑1 (MQ=255) gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc < 1:4266218/50‑1 (MQ=255) gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc < 1:3656055/50‑1 (MQ=255) gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc < 1:2872478/50‑1 (MQ=255) gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGc < 2:2061421/50‑1 (MQ=255) cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt > 2:4236959/1‑50 (MQ=255) tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt > 1:542131/1‑49 (MQ=255) tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt > 2:1026873/1‑49 (MQ=255) ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa > 2:4492629/1‑50 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTg < 2:4394877/48‑1 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa < 1:4591906/49‑1 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt > 1:3392199/1‑50 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt < 1:2213367/50‑1 (MQ=255) gTTGCGAAATAACCAGCTGAGCTATCAGGAACTTTCCTGATTTGGCTGAt < 2:5169606/50‑1 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt < 2:876914/50‑1 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt < 2:282952/50‑1 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt < 1:2161560/50‑1 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt > 1:2504919/1‑50 (MQ=255) tGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg > 1:4117892/1‑50 (MQ=255) gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg < 2:5067042/49‑1 (MQ=255) gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg < 2:3215621/49‑1 (MQ=255) gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg > 2:2947588/1‑49 (MQ=255) gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg < 1:2813196/49‑1 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc < 2:4582513/49‑1 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 1:4388402/1‑50 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 2:2377597/1‑49 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 1:1272894/1‑49 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt < 1:4163422/50‑1 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGAATTGGCTGATTGCAt < 1:556301/50‑1 (MQ=255) aaaTAGCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCGTa < 2:4126689/50‑1 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa > 2:5026463/1‑50 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa < 2:1650005/50‑1 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa > 2:4664179/1‑50 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa > 2:4648688/1‑50 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa > 2:3254887/1‑50 (MQ=255) aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc < 1:2149513/50‑1 (MQ=255) aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc > 2:1557871/1‑50 (MQ=255) aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc < 1:4737541/50‑1 (MQ=255) aTAACCATCTGAACTATCAGGAGCTTTCCTGATTTGGCTGATTGCATAcc < 1:4442478/50‑1 (MQ=255) tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa < 1:1879261/50‑1 (MQ=255) aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa > 2:476560/1‑49 (MQ=255) aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa > 2:5207046/1‑49 (MQ=255) aaCCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCa > 1:4503466/1‑49 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa > 1:3861937/1‑49 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa > 1:2830135/1‑49 (MQ=255) ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa < 2:2799917/50‑1 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa > 2:564178/1‑49 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc < 2:316818/50‑1 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc < 1:1746920/50‑1 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc < 1:4054547/50‑1 (MQ=255) aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa > 2:946728/1‑48 (MQ=255) aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa > 1:3208135/1‑48 (MQ=255) aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACa < 2:2327847/50‑1 (MQ=255) tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt > 2:2166910/1‑50 (MQ=255) tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt > 2:3475879/1‑50 (MQ=255) gAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt > 2:5074300/1‑50 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg < 1:1974081/46‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc < 1:4184668/47‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt < 2:2250194/50‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt > 1:4028848/1‑50 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt < 1:3675153/49‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt < 2:4051058/49‑1 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc < 2:3014081/50‑1 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc > 2:269588/1‑50 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc < 2:716990/50‑1 (MQ=255) cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg < 1:2335091/50‑1 (MQ=255) aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 2:4486629/1‑49 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc < 1:1624721/48‑1 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa < 1:3322660/50‑1 (MQ=255) cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc > 1:4367973/1‑50 (MQ=255) aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc < 1:1847342/49‑1 (MQ=255) aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc < 1:852710/49‑1 (MQ=255) aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg > 1:2041069/1‑50 (MQ=255) ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt < 2:523527/50‑1 (MQ=255) gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt < 2:2047895/50‑1 (MQ=255) gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt < 1:2704801/50‑1 (MQ=255) aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg < 2:4016613/50‑1 (MQ=255) aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg < 1:3912406/50‑1 (MQ=255) aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg < 2:1434419/50‑1 (MQ=255) aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg > 2:2350717/1‑50 (MQ=255) aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc > 2:102400/1‑50 (MQ=255) cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt > 2:670550/1‑50 (MQ=255) cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt < 1:1212680/50‑1 (MQ=255) cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt < 2:1203583/50‑1 (MQ=255) ttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg > 1:1344570/1‑50 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc > 2:1907787/1‑50 (MQ=255) cTGATTTGGCTTATTGCATACCAAAACAGCTTTGGCTACGTTGCTGGCTc < 2:435394/50‑1 (MQ=255) cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc < 1:94155/50‑1 (MQ=255) cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc < 2:1188129/50‑1 (MQ=255) gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt > 1:3496786/1‑50 (MQ=255) gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt > 2:177459/1‑50 (MQ=255) | CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT > NC_000913/3090235‑3090328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |