| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 367,573 | G→A | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 367,573 | 0 | G | A | 94.3% | 631.1 / 14.1 | 177 | intergenic (‑63/+14) | lacI/mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| Reads supporting (aligned to +/- strand): ref base G (7/3); new base A (97/70); total (104/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 179 total aligned reads displayed.
AATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTCCG > NC_000913/367524‑367617 | aaTTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTgcg > 2:4591575/1‑50 (MQ=255) tGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCa > 2:2121971/1‑50 (MQ=255) tGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCa > 2:4611073/1‑50 (MQ=255) gACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCa < 2:2265093/49‑1 (MQ=255) aCTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCAt < 1:3813526/49‑1 (MQ=255) ctctctTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTc > 1:2983930/1‑50 (MQ=255) ctctctTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTc < 2:336252/50‑1 (MQ=255) ctctTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGa > 1:739792/1‑50 (MQ=255) tctTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCg < 1:1114231/48‑1 (MQ=255) tctTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGAt > 1:2871606/1‑50 (MQ=255) ctTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATg > 1:579889/1‑50 (MQ=255) ttCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGa < 1:4804272/47‑1 (MQ=255) ccGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATgg < 2:4824343/48‑1 (MQ=255) ccGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATgg < 1:5290895/48‑1 (MQ=255) ccGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgt < 2:2444778/49‑1 (MQ=255) cGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgtgt < 1:4692123/50‑1 (MQ=255) cGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgtgt > 2:5344637/1‑50 (MQ=255) cGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgtgt < 1:3703713/50‑1 (MQ=255) gggCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGgtgt > 1:1622483/1‑49 (MQ=255) gggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgtgt > 2:923339/1‑49 (MQ=255) gggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgtgt > 1:3341574/1‑49 (MQ=255) gggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgtgt > 2:4933961/1‑49 (MQ=255) gggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgtgt > 2:2344004/1‑49 (MQ=255) gggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGgtgt > 2:3259877/1‑49 (MQ=255) ggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTc > 2:5224000/1‑49 (MQ=255) ggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTc > 2:4881501/1‑49 (MQ=255) ggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTc > 1:4579119/1‑49 (MQ=255) ggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCa < 1:1448553/50‑1 (MQ=255) ggCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCa < 2:2625732/50‑1 (MQ=255) gcgcTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCaa < 2:3441816/50‑1 (MQ=255) gcgcTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCaa < 1:2478282/50‑1 (MQ=255) cgcTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAc < 1:3744772/50‑1 (MQ=255) cgcTAGCATGCCATACCGCGAAAGGTGTTGCACCATTCGATGGTGTCAAc < 2:2880546/50‑1 (MQ=255) gcTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACg > 1:1001052/1‑50 (MQ=255) gcTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACg < 1:1269272/50‑1 (MQ=255) gcTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACg < 1:2598312/50‑1 (MQ=255) gcTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACg > 2:3163010/1‑50 (MQ=255) cTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGt < 1:1487217/50‑1 (MQ=255) cTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGt < 1:3130678/50‑1 (MQ=255) tATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGt > 2:4346259/1‑49 (MQ=255) tATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGt > 1:4005867/1‑49 (MQ=255) tATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGt > 1:1410157/1‑49 (MQ=255) aTCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTa > 1:439475/1‑49 (MQ=255) aTCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTa > 2:1463494/1‑49 (MQ=255) tCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTaaa > 1:3527399/1‑50 (MQ=255) tCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTaaa > 2:5010921/1‑50 (MQ=255) tCATGACATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTa < 1:3377717/48‑1 (MQ=255) cATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAat > 2:5381361/1‑50 (MQ=255) cATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAat > 2:4136438/1‑50 (MQ=255) cATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAat > 2:1084953/1‑50 (MQ=255) cATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAat > 1:32615/1‑50 (MQ=255) aTGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatg > 1:4910208/1‑50 (MQ=255) aTGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatg < 2:3892210/50‑1 (MQ=255) aTGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatg > 1:1538516/1‑50 (MQ=255) aTGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatg < 1:5358063/50‑1 (MQ=255) aTGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatg > 1:1861095/1‑50 (MQ=255) tGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatgc < 1:1756468/50‑1 (MQ=255) tGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatg > 1:3379622/1‑49 (MQ=255) tGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatg > 1:2225152/1‑49 (MQ=255) tGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatg > 1:1559617/1‑49 (MQ=255) ccATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatgcat < 1:2940958/50‑1 (MQ=255) ccATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatgcat > 1:5164957/1‑50 (MQ=255) ccATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatgcat > 1:886392/1‑50 (MQ=255) cATACCGCGAAAGGATTTGCGCCATTCGATGGTGTCAACGTAAatgcatg > 2:3112701/1‑50 (MQ=255) aTACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatgcatgc < 1:1006901/50‑1 (MQ=255) aTACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatgcatgc > 2:1221699/1‑50 (MQ=255) aTACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAatgcatgc > 2:1598710/1‑50 (MQ=255) tACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGcc < 1:4714174/50‑1 (MQ=255) tACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGcc < 1:192316/50‑1 (MQ=255) tACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGcc < 1:2271532/50‑1 (MQ=255) tACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGcc < 1:2125729/50‑1 (MQ=255) tACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGcc < 2:3627386/50‑1 (MQ=255) ccGCGAAAGGTTTTGCAGCATTCGATGGTGTCAACGTAAATGCATGCCg < 2:3066013/49‑1 (MQ=38) ccGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCg < 1:1234040/49‑1 (MQ=255) ccGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCg < 1:683799/49‑1 (MQ=255) ccGCGAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGc > 1:37316/1‑50 (MQ=255) gcgAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCtt < 2:747449/50‑1 (MQ=255) gcgAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCtt < 2:2104126/50‑1 (MQ=255) cgAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCTTc > 2:5062620/1‑50 (MQ=255) cgAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTc < 2:1868842/50‑1 (MQ=255) cgAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTc > 2:2978853/1‑50 (MQ=255) gAAAGGTTTTGCGTCATGCGATGGTGTCAACGTAAATGCATGACACTTCg < 2:2382772/50‑1 (MQ=255) gAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCg > 2:2816843/1‑50 (MQ=255) gAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCg > 2:5187336/1‑50 (MQ=255) gAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCg > 2:3784455/1‑50 (MQ=255) gAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCg > 2:2942107/1‑50 (MQ=255) gAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCg > 2:2571247/1‑50 (MQ=255) gAAAGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCg > 2:1924540/1‑50 (MQ=255) aaaGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGc > 2:4692552/1‑50 (MQ=255) aGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCt > 1:2514399/1‑50 (MQ=255) aGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCt < 1:5004341/50‑1 (MQ=255) aGGTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCt < 1:4773572/50‑1 (MQ=255) ggTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCtt < 2:4295276/50‑1 (MQ=255) ggTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCtt < 1:1575251/50‑1 (MQ=255) ggTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCtt < 2:847718/50‑1 (MQ=255) gTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTc > 2:2723419/1‑50 (MQ=255) gTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTc < 2:2448195/50‑1 (MQ=255) gTTTTGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTc > 1:4959293/1‑50 (MQ=255) tttGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTcgc > 1:2636110/1‑48 (MQ=255) ttGCACCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTcgc < 2:1717706/49‑3 (MQ=255) | AATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCTTCGCCTTCCG > NC_000913/367524‑367617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |