| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,544,022 | 1 bp→AA | coding (39/1389 nt) | narU ← | nitrate/nitrite transporter NarU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,544,021 | 1 | . | A | 100.0% | 34.9 / NA | 10 | R14C (CGC→TGC) | narU | nitrate/nitrite transporter NarU |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (2/8); total (2/8) | |||||||||||
| * | NC_000913 | 1,544,022 | 0 | C | A | 100.0% | 33.4 / NA | 10 | L13F (TTG→TTT) | narU | nitrate/nitrite transporter NarU |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (2/8); total (2/8) | |||||||||||
TTCCTTTATTTTCCCAGAAGGCCGGATTTTCTGGTTTCCAGTCGCG‑CAAAAGATAACGACTATTTTTCTCATTTTGCAGTGCCATATTGTTCCTCA > NC_000913/1543976‑1544071 || ttCCTTTATTTTCCCAGAAGGCCGGATTTTCTGGTTTCCAGTCGCG‑aaa > 2:4891183/1‑49 (MQ=255) ttCCCAGAAGGCCGGATTTTCTGGTTTCCAGTCGCGAAAAAAGATAACg < 2:4843170/49‑1 (MQ=38) cccAGAAGGCCGGATTTTCTGGTTTCCAGTCGCGAAAAAAGATAACGAc < 1:2357577/49‑1 (MQ=38) aGAAGGCCGGATTTTCTGGTTTCCAGTCGCGAAAAAAGATAACGACTAtt > 1:397092/1‑50 (MQ=255) cGGATTTTCTGGTTTCCAGTCGCGAAAAAAGATAACGACTATTTTTCTCa > 1:2158750/1‑50 (MQ=255) cGGATTTTCTGGTTTCCAGTCGCGAAAAAAGATAACGACTATTTTTCTCa < 2:853233/50‑1 (MQ=255) ggATTTTCTGGTTTCCAGTCGCGAAAAAAGATAACGACTATTTTTCTCAt < 2:3679409/50‑1 (MQ=255) ggATTTTCGGGTTTCCAGTCGCGAAAAAAGATAACGACTATTTTTCTCAt < 1:4481492/50‑1 (MQ=255) ttttCTGGTTTCCAGTCGCGAAAAAAGATAACGACTATTTTTCTCAtttt < 2:4616534/50‑1 (MQ=255) ttCTGGTTTCCAGTCGCGAAAAAAGATAACGACTATTTTTCTCATTTTg < 1:1348557/49‑1 (MQ=38) gTTTCCAGTCGCGAAAAAAGATAACGACTATTTTTCTCATTTTGCAGTg < 2:4581830/49‑1 (MQ=38) aaaaaaGATAACGACTATTTTTCTCATTTTGCAGTGCCATATTGTTCCt > 1:3248409/3‑49 (MQ=255) aaaaaGATAACGACTATTTTTCTCATTTTGCAGTGCCATATTGTTCCTca < 2:4139625/49‑1 (MQ=255) || TTCCTTTATTTTCCCAGAAGGCCGGATTTTCTGGTTTCCAGTCGCG‑CAAAAGATAACGACTATTTTTCTCATTTTGCAGTGCCATATTGTTCCTCA > NC_000913/1543976‑1544071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |