| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 765,191 | Δ1 bp | coding (685/723 nt) | mngR ← | DNA‑binding transcriptional repressor MngR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 765,189 | 0 | T | . | 99.4% | 805.6 / 0.5 | 170 | coding (687/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (112/56); minor base A (1/0); total (114/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
Only 100 of 184 total aligned reads displayed.
GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC > NC_000913/765140‑765234 | gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt < 1:3291072/50‑1 (MQ=255) ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt > 1:419314/1‑49 (MQ=255) ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt > 1:4077886/1‑49 (MQ=255) ccTTTTTTGCGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt > 2:4526273/1‑49 (MQ=255) cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta < 2:454759/50‑2 (MQ=255) cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta > 1:1955530/1‑49 (MQ=255) tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta > 2:2280828/1‑47 (MQ=255) tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta > 1:2255054/1‑47 (MQ=255) ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat < 1:1266096/48‑3 (MQ=255) tttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt > 1:4042510/1‑50 (MQ=39) tttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt > 2:267163/1‑50 (MQ=39) tttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt > 1:1651328/1‑50 (MQ=39) ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt < 1:1471184/49‑1 (MQ=38) ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt > 2:333609/1‑49 (MQ=38) tgtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGT‑AACTTATAGTCa > 2:3962715/1‑50 (MQ=38) gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt > 2:1208544/1‑50 (MQ=39) tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt < 1:2021785/49‑1 (MQ=38) tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc > 2:1979669/1‑50 (MQ=39) tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc > 2:878364/1‑50 (MQ=39) tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc < 2:2877358/50‑1 (MQ=39) tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc < 1:2488587/50‑1 (MQ=39) gCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg > 2:1626129/1‑50 (MQ=39) cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 2:2593449/1‑50 (MQ=39) cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 2:1436608/1‑50 (MQ=39) cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg < 1:4369165/49‑1 (MQ=38) cTTATCGCGATGATTTTCGCTGCCCTATCAGGGTAAA‑TTACAGTCATCgg > 1:1056058/1‑50 (MQ=37) ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 2:1455062/1‑49 (MQ=38) ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 1:3968524/1‑49 (MQ=38) ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 2:3105375/1‑49 (MQ=38) ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 2:3790947/1‑49 (MQ=38) ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg > 1:2868336/1‑49 (MQ=38) tATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa > 2:4217566/1‑50 (MQ=39) aTCGCGATGATTTTTGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt > 2:3163055/1‑50 (MQ=38) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt < 2:2049312/48‑1 (MQ=38) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt < 2:4244460/48‑1 (MQ=38) aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt > 1:3099195/1‑50 (MQ=39) aTCGCGATGATTTTCGCTGCGCTATCA‑GGTAAA‑TTATAGTCATCGGTAt > 1:2170181/1‑49 (MQ=37) cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:725874‑M1/1‑50 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:599839‑M1/1‑49 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 2:1158036‑M1/1‑49 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta < 2:2723367‑M1/50‑3 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 2:1869558‑M1/1‑48 (MQ=255) cgATGATTTTCGCTGCGCTATCAGAGTAAA‑TTATAGTCATCGGTATTAta < 2:128191‑M1/50‑3 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 2:2993786‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:2455412‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:2195434‑M1/1‑47 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc > 1:3822786‑M1/1‑45 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc > 1:3844642‑M1/1‑45 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:1859849‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:2669591‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:491912‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 2:1343528‑M1/1‑44 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:3490227‑M1/1‑43 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 2:3501277‑M1/1‑42 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 2:1373872‑M1/49‑10 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 2:450157‑M1/49‑10 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca > 1:3361922‑M1/1‑40 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 2:3444551‑M1/49‑10 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 2:334448‑M1/49‑10 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa > 1:461808‑M1/1‑39 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa < 1:2822144‑M1/49‑11 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:4174512‑M1/1‑38 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:1511063‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 2:3907063‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 2:3305553‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 2:258043‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 2:2462067‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 2:4027475‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 2:4360178‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 2:3548863‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac < 2:2491116‑M1/49‑13 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac < 1:3628941‑M1/49‑13 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 1:1015616‑M1/1‑36 (MQ=255) tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 2:726083‑M1/1‑35 (MQ=255) tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:155660‑M1/1‑35 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 2:1122508‑M1/1‑34 (MQ=255) gcgcTATCAGGGCAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 2:237521‑M1/1‑34 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:3933044‑M1/1‑33 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa < 2:55062‑M1/49‑17 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa < 2:828922‑M1/49‑17 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccga < 1:4427008‑M1/48‑16 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:2612826‑M1/1‑32 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:4289711‑M1/1‑32 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:2999645‑M1/1‑32 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 2:3762879‑M1/1‑31 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:1011504‑M1/1‑31 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 2:2549684‑M1/1‑31 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:823727‑M1/1‑31 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:2159341‑M1/1‑30 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 2:3740680‑M1/1‑30 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca < 2:4343262‑M1/50‑23 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca < 1:2956703‑M1/50‑23 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 2:4551631‑M1/1‑27 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:3475812‑M1/1‑27 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 2:658869‑M1/1‑27 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 2:2376406‑M1/1‑27 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat > 1:2327858‑M1/1‑25 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg > 1:431840‑M1/1‑24 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc > 1:925970‑M1/1‑23 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:3827382‑M1/50‑28 (MQ=255) | GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC > NC_000913/765140‑765234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |