BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,400,309	Δ1 bp	coding (1465/1527 nt)	abgT ←	p‑aminobenzoyl glutamate:H(+) symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,400,308	0	A	.	100.0%	419.3 / NA	85	coding (1466/1527 nt)	abgT	p‑aminobenzoyl glutamate:H(+) symporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (30/55); total (30/55)

TGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400259‑1400353

tGGGTAAATACCCAGACCTATCGGCAGACCGACAAGATACCACGCCAGCa                                               <  1:1973168/50‑1 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             <  2:840764/50‑3 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             >  1:4294403/1‑48 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             <  1:4299663/50‑3 (MQ=255)

  ggTAAATACCAGGACCTATCGGCAGACCGACAAGACACCACGCCAGCaca                                             <  2:2814131/50‑3 (MQ=255)

          cccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGcc                                   <  2:1570057/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  2:4195954/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  1:4340260/1‑50 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  1:2228030/1‑50 (MQ=255)

           ccGGAACTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  2:3048486/50‑1 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  1:132118/50‑1 (MQ=255)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               <  2:504414/50‑1 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  1:354‑M1/49‑2 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  1:2941107‑M1/49‑2 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  1:87353‑M1/49‑2 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  2:2959780‑M1/49‑2 (MQ=255)

               acctATCGGCAGACCGACAAGATACAACGCCAGC‑ACATC‑GCAGCCATACt                              <  1:248676‑M1/49‑2 (MQ=255)

               aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  1:4185098/1‑49 (MQ=38)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  2:1331607‑M1/50‑3 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  2:1552850‑M1/50‑3 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCGCGCCAGC‑ACATC‑GCAGCCATACtat                            <  1:594315‑M1/50‑4 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            >  2:417947‑M1/1‑47 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  2:1138793‑M1/1‑46 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:1358286‑M1/1‑46 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:3890439‑M1/1‑46 (MQ=255)

                    tCGGCAGACCGACAAGATGCCACGCCAGC‑ACATC‑GCAGCCATACtatgc                          <  1:3044776‑M1/49‑6 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCGTACtatg                           <  2:880130‑M1/48‑5 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATGCtatgc                          <  2:1590181‑M1/49‑6 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgca                         <  1:1924387‑M1/50‑7 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgca                         <  1:2478189‑M1/50‑7 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           <  1:3304904‑M1/48‑5 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:416712‑M1/1‑44 (MQ=255)

                     cGGCAGACCGACAATATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:3638254‑M1/1‑43 (MQ=255)

                     cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:3519961‑M1/1‑43 (MQ=255)

                     cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:185135‑M1/1‑43 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        <  2:4426809‑M1/49‑8 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        <  2:244872‑M1/49‑8 (MQ=255)

                       gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa                      <  1:2418923‑M1/50‑10 (MQ=255)

                        cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     <  2:4161687‑M1/50‑11 (MQ=255)

                        cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     <  2:1389636‑M1/50‑11 (MQ=255)

                        cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     <  2:1721302‑M1/50‑11 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:2376078‑M1/1‑39 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  2:3381778‑M1/1‑39 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑GCATC‑GCAGCCATACtatgcagaaaca                   <  2:3506634‑M1/50‑13 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca                   <  2:546576‑M1/50‑13 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca                   <  2:626872‑M1/50‑13 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  >  2:4364328‑M1/1‑37 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACA‑CCGCAGCCATACtatgcagaaacaa                  <  1:2948622‑M1/50‑14 (MQ=255)

                            ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 <  2:4221842‑M1/50‑15 (MQ=255)

                            ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 >  1:152967‑M1/1‑36 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:2711154‑M1/50‑16 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  2:337110‑M1/50‑16 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  2:25787‑M1/1‑35 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:511022‑M1/1‑35 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:2374560‑M1/50‑16 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  2:2509037‑M1/1‑34 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               <  1:1587107‑M1/50‑17 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              >  2:1855835‑M1/1‑33 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              >  2:4028067‑M1/1‑33 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:1147814‑M1/50‑18 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:206947‑M1/50‑18 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             >  1:3181168‑M1/1‑32 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             >  2:2786458‑M1/1‑32 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            <  1:3551874‑M1/50‑20 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            <  2:2033987‑M1/50‑20 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  2:4404872‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  1:836138‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  1:4012367‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  2:3677660‑M1/1‑30 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  2:2050049‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  2:394245‑M1/50‑21 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg          <  1:502430‑M1/50‑22 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  2:3075773‑M1/1‑29 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  1:1553208‑M1/1‑29 (MQ=255)

                                    aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         <  2:2744679‑M1/50‑23 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  2:3864368‑M1/50‑24 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:2553783‑M1/50‑24 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg      >  2:3729358‑M1/1‑25 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg      >  1:3061147‑M1/1‑25 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg      >  2:330503‑M1/1‑25 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg       <  2:1752962‑M1/49‑25 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg       <  1:228679‑M1/49‑25 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  1:1581281‑M1/50‑28 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  1:1729930‑M1/50‑28 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   >  1:1023820‑M1/1‑22 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  <  1:1373583‑M1/50‑30 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  <  2:4359788‑M1/50‑30 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  >  2:2338422‑M1/1‑21 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  <  1:953704‑M1/50‑30 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  <  1:665080‑M1/50‑30 (MQ=255)

TGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400259‑1400353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`