| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 104 [1] | [0] 100 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 1 (0.010) | 98 (0.860) | 54/96 | 0.1 | 99.5% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
Only 100 of 103 total aligned reads displayed.
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:216965/50‑1TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC > 1:1169326/1‑50TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:3597109/50‑1 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCAATC > 1:1664608/1‑49 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTA < 2:1740104/50‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTA < 2:43628/50‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:2652605/49‑1 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC < 2:4439155/50‑1 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC < 2:3061511/50‑1 GTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTTCC > 1:1294834/1‑50 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:2790852/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCTCCCcc > 2:457866/1‑47 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 1:3641964/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 2:465423/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 2:1084245/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 2:3090260/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:1968303/49‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTTTACCTCAA > 2:3571581/1‑50 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAA < 1:3312561/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTGCCTCAAT < 1:3173663/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:2633833/50‑1 TGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCCCTCTATCCCAATt > 2:2225023/1‑49 TGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG > 1:2195139/1‑50 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACCCCACCTCAATGT > 2:712521/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCCCAATGTG > 1:2433567/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:1041805/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 2:3885617/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:3064425/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:2191100/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 2:1975249/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 2:1724597/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 2:4542378/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATAACTCTACCTCCATGTG > 1:4122685/1‑50 AGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATGTG > 1:3365191/1‑49 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:4091435/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:1214043/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 2:570157/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:1345073/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 2:3026935/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:339765/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 2:3093973/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:3864711/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:1843289/49‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCCATGTGTATCACAA > 1:108670/1‑50 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCCATGTGTGTGACAAT > 2:118373/1‑50 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:2148575/50‑1 AGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATGTGTATCACAATA > 1:1732180/1‑50 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:4370842/50‑1 ACCTGTAAAGTGGCGGGGGTCACTCTACCTCCATTTGTATCACAATATa > 2:386751/1‑48 ACCTGTAAAGTGGCGGGGGTCACTCTACCTCCATGTGTATCACAATATa > 2:2979267/1‑48 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 2:2552152/50‑1 TGTAAAGTGGCGGGGGACACCCTACCTCAATGTGTATTACAATATCCATA > 2:2526519/1‑50 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:4185109/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 2:4288937/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 2:614747/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 2:1733262/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 2:3015464/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:2057150/48‑1 AAGTGGCGGGGATCACTCTACCTCCATGTGTATCACCATATCCATATTCT > 2:210860/1‑50 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:813148/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:1444441/50‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 2:1647714/50‑1 GTGGCGGGGATCACTCTCCCTCAATGTGTATCACAATATCCATATACTTT < 2:1152016/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 2:1079853/50‑1 TGGCGGGGATCACTCTGCCTCAATGTGTATCACAATATCCATATTCTTTG < 2:3424020/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 2:225547/1‑50 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 2:1451390/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG > 1:1420264/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:1744553/49‑1 CGGGGATCAATCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG < 2:3293338/50‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 2:2952185/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:3089300/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:479054/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 2:191832/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGag < 2:4040234/50‑3 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:3761344/1‑50 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 2:2709731/1‑49 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:2953653/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 2:2475563/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:2932112/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:3477547/1‑48 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG < 1:1796246/50‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 1:305285/1‑50 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 2:220052/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 2:2749085/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1118084/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 2:451347/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:3387204/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:2669712/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:1068857/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 2:433823/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 2:3813686/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:473991/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 2:110423/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 2:2509059/1‑50 CTCTACCTCAATGTGTAGCACAATAGCCATATTCTTTGTGGGGGAGTCTG < 2:4438401/50‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:4305913/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:3831902/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:1958195/1‑49 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:1510741/1‑48 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |