| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 182 [0] | [0] 180 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 177 (1.520) | 76/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 177 total aligned reads displayed.
TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 2:2259417/1‑50 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:4537505/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 2:756784/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 2:2250042/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 1:4384296/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:1962468/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 2:51410/49‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:509811/49‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:3623560/49‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 2:3698576/49‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 2:3311742/49‑1 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:2874517/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:2426427/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 2:1927690/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 2:1997619/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 2:2001153/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:1456521/49‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG < 2:4521908/49‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:2170099/49‑1 gTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTGTGCC < 1:2734497/49‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:279970/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:514895/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:1611074/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 2:3405002/1‑50 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGCTAACGTTTGCCG > 2:3167010/1‑49 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 2:2483614/49‑1 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 2:1085097/1‑49 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 2:3991863/1‑49 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1825337/1‑49 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 2:1309472/1‑48 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG < 2:3193878/50‑1 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG > 1:2955384/1‑50 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCA < 1:3811299/49‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 1:3091606/1‑50 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 1:3241210/1‑50 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 2:382133/1‑50 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 2:1860518/1‑50 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT < 2:1019992/50‑1 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT < 1:3815610/50‑1 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT < 1:4535539/50‑1 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT < 2:333720/50‑1 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT < 2:2412374/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 2:1281662/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 2:3009838/50‑1 ATTATCATATTTACGAAGAGATCAGGATTATAACGTTTGCCGCAGGTCAA > 1:2800823/1‑50 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 2:4550097/1‑50 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA < 1:1022873/50‑1 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 2:1236976/1‑50 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:1961461/1‑50 TATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT > 1:1590862/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:35561/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:4262000/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:585922/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 2:3863881/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT < 1:3937489/49‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCC < 1:2515380/50‑1 TCATATTTACGAAGAGATCAGGATGATAAAGTTTGCCGCAGGTCAATTCC > 1:3002242/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:1317286/49‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:2131171/49‑1 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT > 1:3309790/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 2:1673318/50‑1 TTTACGAAGAGATCAGGATGATAACGTTGGCCGCAGGTCAATTCCCTTTT < 2:3312832/50‑1 TTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG > 2:1581684/1‑50 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:346618/1‑50 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG < 2:1514504/49‑1 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG < 1:1177993/49‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:2447696/49‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:2245177/49‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:4457890/49‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC < 2:2396738/50‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC < 2:2576712/50‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:807965/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:803693/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC < 2:626705/50‑1 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGA < 1:3701958/50‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 2:4222761/50‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:451183/50‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:68536/50‑1 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC < 2:2769758/50‑1 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT < 1:1246655/50‑1 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT > 1:2134714/1‑50 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG < 2:4380101/50‑1 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGC < 1:1271149/49‑1 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA < 2:3068559/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT < 1:1289463/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:1552679/1‑49 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAAT < 1:4094647/50‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAAT < 1:4210142/50‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:2097568/49‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA > 2:3913899/1‑49 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:474281/49‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:1643740/49‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA > 1:2849385/1‑49 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA > 2:415111/1‑50 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 1:385094/50‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC < 1:1664572/49‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:2011915/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 2:4457223/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC < 2:1640588/50‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:2669728/1‑50 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |