| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 114 [0] | [0] 112 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 110 (0.960) | 61/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
Only 100 of 114 total aligned reads displayed.
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040453‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 2:4402097/1‑49TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 2:3999611/1‑49 TTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 2:2383761/1‑48 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCGCCCTTCA < 2:2022388/49‑1 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG > 2:3954262/1‑50 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG > 1:1305775/1‑50 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG > 1:3558915/1‑50 TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCA < 1:2358737/49‑1 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT > 1:1300483/1‑50 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 2:1425240/49‑1 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 2:1516176/49‑1 ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 2:4413335/49‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT < 2:3117535/50‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT < 1:3783172/49‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT < 2:1824921/49‑1 TTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:107251/1‑49 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 2:2876572/48‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:2206972/48‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:1303814/48‑1 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA > 1:1432106/1‑50 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 2:3971282/50‑1 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC < 1:1950345/50‑1 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC < 1:2210041/50‑1 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATGCC < 1:3534147/49‑1 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT > 1:1039132/1‑50 CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:1377462/49‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 2:3791523/1‑50 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:1773573/1‑50 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:1338007/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATGCCTGGGG < 2:1744900/50‑1 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:207896/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:2006926/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 2:1522810/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG < 1:4538271/49‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:1834890/50‑1 GCATTTTGTTGATGTGTTCCCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:3493173/1‑49 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA < 1:3109495/50‑1 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA < 2:1457347/50‑1 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:737110/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 1:599978/1‑50 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT < 2:2834017/50‑1 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT > 2:738462/1‑50 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 2:4019654/50‑1 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT > 2:561258/1‑50 TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:3508029/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:457311/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG < 1:4504540/49‑1 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG < 2:2606798/49‑1 GTTGATGTGTTCGCTCTCCTCCCTTCAGTTCGATACCTGGGGTATTCGA < 1:2874228/49‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 2:3161784/1‑50 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA < 2:1359952/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 2:1089591/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 2:650191/49‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:3267882/49‑1 TTGATGTGTTCACTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:137005/49‑1 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC > 2:2761868/1‑50 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:293294/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:1293498/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACG < 1:1674538/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 2:746678/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 2:3219476/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:1472523/49‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 2:2979700/49‑1 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGA > 1:3572781/1‑50 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGA > 1:2813716/1‑50 TGTTCGCTCTCCTCCCTTCAGTTCGATTCCTGGGGTATTCGACGACGAC < 2:534380/49‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 2:1498339/49‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 2:2656262/49‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 2:1469045/49‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:2293344/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:3204356/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 2:706833/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 2:762423/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGT < 2:2874206/49‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGT < 2:4332187/49‑1 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA > 2:269458/1‑50 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA > 1:3816631/1‑50 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG < 1:3459252/49‑1 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG < 2:3383734/49‑1 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG < 1:2434007/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 2:1866199/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA < 2:4197907/49‑1 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 2:2636594/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:3893779/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 2:905200/1‑50 CTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT > 2:2980633/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT > 1:916655/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT > 2:3399705/1‑50 CCACCCTTCAGTTCGATACCTGGGGAATTCGACGACAACGTAGACTGTcc > 1:2025637/1‑48 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:27619/1‑49 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC < 1:1199299/49‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC < 1:3848711/49‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 2:813274/1‑49 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT < 2:3689545/48‑1 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA > 2:524471/1‑50 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT < 2:2123994/50‑1 CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG < 2:1523843/50‑1 gTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG > 2:3620497/2‑49 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA < 1:3936770/50‑1 TCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > 1:1354289/1‑49 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040453‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114265‑1114312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |