| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 120 [0] | [0] 120 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 118 (1.010) | 58/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 118 total aligned reads displayed.
‑CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACT < 2:2959780/49‑1aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACT < 1:87353/49‑1aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACT < 1:354/49‑1aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACT < 1:2941107/49‑1aCCTATCGGCAGACCGACAAGATACAACGCCAGC‑ACATC‑GCAGCCATACT < 1:248676/49‑1 CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA < 2:1552850/50‑1 CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA < 2:1331607/50‑1 CTATCGGCAGACCGACAAGATACCGCGCCAGC‑ACATC‑GCAGCCATACTAT < 1:594315/50‑1 CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT > 2:417947/1‑50 TATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 2:1138793/1‑50 TATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:3890439/1‑50 TCGGCAGACCGACAAGATGCCACGCCAGC‑ACATC‑GCAGCCATACTATGC < 1:3044776/49‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCGTACTATG < 2:880130/48‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATGCTATGC < 2:1590181/49‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCA < 1:1924387/50‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCA < 1:2478189/50‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:416712/1‑48 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG < 1:3304904/48‑1 CGGCAGACCGACAATATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:3638254/1‑47 CGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:185135/1‑47 CGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:3519961/1‑47 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG < 2:244872/49‑1 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAA < 1:2418923/50‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 2:4161687/50‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 2:1721302/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 2:3381778/1‑49 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:2376078/1‑49 GACCGACAAGATACCACGCCAGC‑GCATC‑GCAGCCATACTATGCAGAAACA < 2:3506634/50‑1 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACA < 2:546576/50‑1 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACA < 2:626872/50‑1 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 2:4364328/1‑50 CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT < 2:4221842/50‑1 CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT > 1:152967/1‑50 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 1:2711154/50‑1 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG > 2:25787/1‑50 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 2:337110/50‑1 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 1:2374560/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 1:1587107/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC > 2:2509037/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT > 2:1855835/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:1147814/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:206947/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT > 2:4028067/1‑50 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:3181168/1‑50 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT < 2:2033987/50‑1 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT < 1:3551874/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 2:3677660/1‑50 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 2:394245/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 1:4012367/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 2:2050049/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 2:4404872/50‑1 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG < 1:502430/50‑1 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:1553208/1‑49 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 2:3075773/1‑49 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA < 2:2744679/50‑1 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 2:3864368/50‑1 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:2553783/50‑1 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG > 1:3061147/1‑50 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG > 2:330503/1‑50 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 2:1752962/49‑1 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT < 1:1581281/50‑1 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT < 1:1729930/50‑1 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG > 1:1023820/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 2:2338422/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC < 2:4359788/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC < 1:665080/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC < 1:953704/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC < 1:1373583/50‑1 tcGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTC < 1:1263647/48‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:4120164/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:2580074/1‑47 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 2:221788/1‑50 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA < 1:3062680/50‑1 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:3142953/1‑50 AGCCATACTATGCAGAAACAATGCTGTCTATGGCTGCTTTTGCGTCAGAC > 1:1091120/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:2457927/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 2:4473451/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC < 1:561395/50‑1 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC < 2:257224/50‑1 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT < 1:1208253/50‑1 CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG < 1:1691341/50‑1 CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG > 1:531572/1‑50 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT > 2:197529/1‑50 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT < 2:2066643/50‑1 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT > 1:1605812/1‑50 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGcg > 1:2799352/1‑48 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 2:3084599/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG > 1:3210430/1‑50 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 2:2789608/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 2:2967878/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG > 1:736815/1‑50 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 2:3216448/50‑1 ATACTATGCAGAAACAATGCTGCCGATGGCTGCTTTTGCGTCAGACTGTG > 2:3867886/1‑50 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC > 2:2759078/1‑50 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC < 2:125244/50‑1 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC > 2:1126885/1‑50 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC < 2:694173/50‑1 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT < 2:4049361/50‑1 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > 1:1355340/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT < 1:4304234/50‑1 ‑CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |