| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 166 [0] | [0] 167 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 160 (1.400) | 72/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 166 total aligned reads displayed.
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627468‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > NC_000913/1652762‑1652810 GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:2148457/50‑1GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 2:3184093/50‑1 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:1554076/50‑1 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 2:1335252/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG < 1:4397740/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 2:3315890/1‑50 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC > 2:3769809/1‑50 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 2:1441546/49‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 2:539437/1‑49 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:630827/49‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:1589482/49‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:1376820/1‑49 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:1327626/1‑49 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGCGAGAAGCG > 1:450184/1‑49 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:3007590/1‑48 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:2416269/1‑48 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:2436295/1‑48 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 2:86005/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:3880637/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 1:2803433/50‑1 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 2:992748/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 2:2537562/50‑1 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 2:2777289/50‑1 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 2:1890150/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 2:401877/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:1570906/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:1766569/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:4272169/1‑50 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 2:3895587/49‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:4037025/1‑48 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC < 2:3610306/50‑1 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC < 2:861645/50‑1 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 2:1419775/1‑49 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:3606354/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCC < 2:62792/49‑1 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCC < 1:1534213/49‑1 TTGGCACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA < 2:4279325/49‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT < 2:3448793/50‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT > 1:4065757/1‑50 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA < 2:760758/49‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA < 2:3605070/49‑1 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:710451/1‑50 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC > 2:1112966/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:2056316/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:2004573/50‑1 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 2:66249/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:3203913/50‑1 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCG < 2:3839901/50‑1 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCG < 2:2624206/50‑1 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 2:3376489/1‑49 ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 2:3111951/1‑50 ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 1:4318736/1‑50 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCTGCCATCCCGAT < 2:3465445/50‑1 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCCTCCCGA > 1:886327/1‑49 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGAT < 2:1511767/50‑1 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 2:333814/1‑49 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 2:3283071/50‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 2:1825387/50‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 2:2488405/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 2:2901970/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 2:3205955/50‑1 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG > 1:3406357/1‑50 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT > 2:227901/1‑50 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:3277952/50‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG < 1:815474/50‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG > 1:4503487/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 2:1326507/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 2:4348068/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT < 2:1502490/50‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCCTCCCGATACTGCTGCTT > 2:4083008/1‑50 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:1693187/50‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:1918764/50‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT > 1:2930550/1‑50 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT > 2:1927565/1‑50 TTGAGGAACAGTGAGAAGCGCAGTCCCCAGCCATCCCGATACTGCTGCTT > 2:3521811/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:1061735/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:1547930/1‑50 TGAGGAACAGAGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 2:3956068/1‑50 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:1781109/49‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 2:4254289/1‑49 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:1435623/49‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA < 1:916473/50‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA < 2:1486661/50‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC < 2:2857664/49‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC < 1:2459276/49‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC < 1:2557183/49‑1 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:22506/1‑49 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC > 2:4321244/1‑49 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA > 1:2467957/1‑49 CAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAA < 1:3325494/50‑1 CAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAA > 1:3634842/1‑50 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT > 1:4474355/1‑50 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATC > 1:2724152/1‑50 GAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 2:4216429/1‑50 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:1165039/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 2:2679482/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 2:1029483/1‑49 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 2:4362032/1‑48 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > 1:3013153/1‑50 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > 2:2521160/1‑50 GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627468‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > NC_000913/1652762‑1652810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |