| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 154 [0] | [0] 157 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 147 (1.310) +GA |
74/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
Only 100 of 161 total aligned reads displayed.
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:2362975/50‑1 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 2:2795628/50‑1 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 2:2486270/50‑1 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 2:2493029/1‑49 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 2:1942966/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 2:94467/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:1529602/1‑50 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:1792867/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:338711/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 2:1708583/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 2:1482718/50‑1 GCTTCACAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 2:1264800/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 1:3317306/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:2330052/1‑50 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:2296325/1‑50 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:1387360/1‑50 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 2:36439/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 2:416662/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 2:2117720/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:1176188/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 2:1217142/49‑1 TCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT > 2:1984228/1‑50 CAGCAGCACTGACATCCATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 1:3505279/1‑50 CAGCAGCACTGACATCAATTTGTGTCACCCGAAGCGCATAGAACGCCATT > 2:341335/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:681844/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA < 1:4443909/47‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:475348/50‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 2:4021439/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG < 2:438744/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 2:4295415/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGA < 2:3574391/50‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG > 1:4244335/1‑49 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 2:1344084/1‑50 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:3059179/1‑50 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:1889036/1‑50 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:162907/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 2:572468/50‑1 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 2:166588/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 2:2180261/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 2:1428166/1‑49 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 2:4248581/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:3726681/49‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:574067/49‑1 CATCACTTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 2:1008247/1‑49 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 2:2588505/50‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 2:2803359/1‑49 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 1:552014/1‑49 ATCAATTTGTGTCACCCGCAGCGTATAGAACGCCATTTTGAATTTACGAA > 2:3616525/1‑50 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA > 1:405232/1‑50 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC > 2:1844851/1‑50 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 2:4507889/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:4508906/1‑49 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:3814319/1‑50 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:1914886/1‑50 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:2251197/50‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:1423411/1‑50 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 1:365539/1‑50 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:2066972/50‑1 TTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 2:1591878/1‑50 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:997220/1‑49 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:2848047/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 2:1105629/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:1589701/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 2:4458061/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:2172916/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:805502/49‑1 CACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 2:2624872/1‑50 CACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 2:502318/1‑50 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:2609567/50‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 2:4414359/49‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 2:2147569/1‑48 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:1253131/1‑48 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 1:715184/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 2:2319234/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:1217656/50‑1 CGCAGCGCATATAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:3169188/1‑50 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGGCGCATTATCAGT < 2:809663/50‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:4065756/1‑50 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:4060729/1‑50 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTG < 2:3805481/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:3118982/1‑49 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA > 2:3347189/1‑50 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 2:3518131/1‑50 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC < 1:3309738/50‑1 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT > 2:1098844/1‑50 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT > 1:2898477/1‑50 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT < 1:4544643/50‑1 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 2:811821/1‑50 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:2938728/1‑49 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:2834472/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 2:3035727/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 2:2871514/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:2503980/1‑49 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:2396699/1‑50 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 2:2553393/1‑50 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:2010425/1‑50 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:4364935/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:2661228/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG < 1:1123336/50‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC < 2:3652425/50‑1 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |