| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 144 [0] | [0] 144 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 138 (1.210) | 72/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 144 total aligned reads displayed.
CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > NC_000913/3191698‑3191746 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 2:2752430/50‑1 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 2:2021906/50‑1 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 1:3143462/50‑1 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT < 1:2116686/50‑1 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATACTGGTTTATATC > 1:4300697/1‑50 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATat < 1:2710085/49‑3 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTA < 1:3018085/50‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT < 2:2400830/49‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT < 2:4097779/49‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT < 2:1524140/49‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT < 2:3802325/49‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT > 1:2083186/1‑49 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 2:4372054/1‑50 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 2:540827/1‑49 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAAT < 2:4409980/49‑1 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA > 2:3345634/1‑49 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA > 1:2365236/1‑49 TAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC > 2:2456556/1‑49 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA > 2:3529149/1‑49 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:1907475/49‑1 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA > 2:2701876/1‑49 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA < 1:3070195/50‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA < 2:2890723/50‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA < 2:1227637/50‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 2:1572410/1‑50 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC < 2:2706565/50‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA > 1:180762/1‑50 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 1:3267803/50‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 2:1099130/50‑1 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 2:1183042/50‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 2:125571/50‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 2:4500475/1‑49 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA < 2:652186/50‑1 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA < 2:754167/50‑1 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA > 2:1952060/1‑49 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA > 2:4165982/1‑49 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA > 1:3410501/1‑49 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA > 1:867604/1‑49 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 2:913774/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 2:3728231/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 2:2658564/1‑49 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA < 1:1652571/50‑1 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 2:2256549/50‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG < 2:3878034/50‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG > 1:2143881/1‑50 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG > 1:2144527/1‑50 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG > 1:3164130/1‑50 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG < 1:3660992/50‑1 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG < 1:2961098/50‑1 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG > 2:3061091/1‑50 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC < 2:3016824/50‑1 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC < 2:1854273/50‑1 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCC < 1:2235093/50‑1 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 2:3971953/1‑49 TAGCTTCACATAAGTCTGGTTTATATCTAATACAAACACTAAAACGGGCC < 2:449103/50‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT < 1:1632569/50‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:622099/49‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:1779448/49‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:981599/49‑1 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:2837957/1‑48 TCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG > 2:3230496/1‑50 TCACATAATTCTGGATTATATCTAATACAAACACTAAAACGGGCCATCAG > 1:4334558/1‑50 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG > 1:1071466/1‑50 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG < 2:168456/49‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:1522227/48‑1 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGC < 2:2671959/50‑1 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 2:2860794/1‑50 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 1:4456177/1‑50 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC < 1:3762814/50‑1 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 2:4314369/1‑50 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC < 1:1322060/50‑1 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:2735720/1‑50 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:2291726/1‑50 AATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:3321411/1‑50 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT < 1:2542854/50‑1 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT < 1:4019227/50‑1 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:1153626/1‑49 TTCTGGTTTATATCTACTACAAACACTAAAACGGGCCATCAGGCCCGTTA > 2:3463788/1‑50 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:1761172/1‑50 TGGTTTATATCTAATACAAACACTACAACGGGCCCTCAGGCCCGTTATAT > 1:3029283/1‑50 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:1167069/1‑50 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:4008592/1‑50 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 2:3936709/1‑50 GGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 2:871971/1‑49 GGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 2:2524010/1‑49 GGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 2:194129/1‑49 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCA < 2:4052182/50‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:2259891/1‑48 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG > 2:3734513/1‑50 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG < 1:338534/50‑1 TTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT > 1:4563500/1‑50 TTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT > 1:1940265/1‑50 TATATCTAATACAAACACTAAAACGGGGCATCAGGCCCGTTATATCAGT < 1:3566643/49‑1 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG > 1:3263090/1‑50 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG > 1:3731349/1‑50 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > 2:600928/1‑50 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG < 2:3968823/49‑1 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT < 2:1106107/50‑1 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > 2:3554823/1‑50 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC < 2:718240/49‑1 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > NC_000913/3191698‑3191746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |