| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 211 [0] | [0] 205 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 204 (1.750) | 84/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 204 total aligned reads displayed.
TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 2:1188631/50‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 2:3133660/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAAAATCAATGAATACTAA > 1:1165964/1‑50 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 2:655293/1‑49 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 2:1946098/1‑49 AGACACATTACATTCACTGTATTTATAACAACTTCAATGAATACTAAC < 1:1409990/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 2:494479/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:4067575/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:2570174/49‑1 AGACACATTACATTCACTGTATTAATAACAACATCAATGAATACTAACAA > 1:3469815/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 2:4517466/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 2:2662276/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:4300006/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 2:4381067/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 2:3958918/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:583061/50‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 2:2077178/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGG < 2:1904486/50‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 2:3830077/50‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:3716022/50‑1 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:3116914/1‑49 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 2:290997/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:2690434/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 2:1174089/1‑48 CATTCACTGTATTTATAACATCATCAATGAAGACTAACAATGCCGGACA < 1:3605564/49‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 2:1492457/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 2:3339450/1‑50 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 2:3458557/1‑49 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 2:822106/1‑49 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:3518282/1‑50 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:2484734/1‑50 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:1490325/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:764178/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:4014781/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:1567355/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:1136593/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAAGGCCGGACAGGAGTA < 2:2632663/50‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:2842327/50‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:2208376/1‑50 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:169869/1‑50 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 2:2203561/1‑49 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:173158/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 2:2442034/48‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:1069547/48‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 2:2386983/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 2:2157913/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:500067/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 2:1054096/1‑48 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:253249/1‑48 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:873695/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:428478/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 2:322001/50‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 2:3626526/50‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:2967743/1‑50 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 2:375143/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 2:4056042/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:734672/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:3745502/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:1925511/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 2:3251386/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:1217688/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 2:755771/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:2313265/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 2:1261035/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 2:1478671/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 2:856451/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:3866860/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:2514045/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 2:2750086/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:3343053/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 2:3358409/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:1288466/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:1520379/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 2:384527/49‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:2680725/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 2:3550768/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:517577/50‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 2:3445334/50‑1 ATGAATACTAACAATGCCGGACAGGAGCACTATCAGGCATTCGTTTTATA > 2:2488579/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:440284/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:4543122/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:1806531/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 2:3607128/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 2:1607607/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 2:3587017/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:4254956/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 2:3719590/49‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:4358023/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:3105704/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:1433898/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:3896511/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 2:1767305/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCGTTCATTTTATACGATC < 2:2313480/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:4177992/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:2243996/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:2002625/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:4112779/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 2:3865317/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 2:722756/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:3031099/49‑1 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |