| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 69 [0] | [0] 70 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 66 (0.580) | 50/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618942‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625680‑3625728 CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT < 2:905625/50‑1 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA > 1:2024397/1‑50 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA > 1:2979590/1‑50 GCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACG < 1:4313185/50‑1 CGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:1254758/1‑50 CGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 2:2991296/1‑50 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:1630451/1‑49 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA < 2:2557189/50‑1 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 2:3005561/1‑50 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 1:3565844/1‑50 GCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT > 2:2312480/1‑50 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT > 1:2514340/1‑50 CACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC > 2:1488054/1‑50 CACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC < 2:2359108/50‑1 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:2897648/1‑50 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC < 1:1519851/50‑1 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:388532/1‑49 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:2458885/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:1130167/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:4460154/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 2:3215983/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:3503046/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:2688101/50‑1 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 2:600169/1‑50 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG < 1:2928649/50‑1 TTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC > 2:3022704/1‑50 TGCAGTGCTTGCCGAAGGAAGATTGCGTTACGCCATTGTCCCAATCGTCT > 2:3868444/1‑50 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT > 2:3483072/1‑50 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC < 2:981660/50‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:4069641/1‑50 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG < 1:2761652/50‑1 GCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG > 1:3684207/1‑49 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:4364792/1‑50 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA < 1:3734287/50‑1 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 2:2899213/1‑50 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 2:2086404/1‑50 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:1148766/1‑50 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:1422578/1‑50 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:4514331/1‑50 TGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC > 2:2048420/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 2:1323555/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 2:306646/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 2:2460937/49‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGC < 1:396380/50‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGC < 2:4029919/50‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 2:2128971/1‑49 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 2:737419/49‑1 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 2:1123725/1‑50 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 2:1507229/1‑49 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 2:861989/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 2:3987307/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:2278507/1‑48 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC < 2:309805/50‑1 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:1448075/1‑49 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 2:1122894/1‑49 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCA < 2:1985332/50‑1 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC > 2:1105030/1‑49 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC > 2:4325655/1‑49 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 2:3726559/1‑50 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 2:3361465/1‑50 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT < 1:2394661/50‑1 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGG > 1:4302874/1‑50 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG < 2:235772/49‑1 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:1915779/1‑50 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT < 1:516166/50‑1 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGG < 1:4552184/49‑1 GTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG < 2:560548/50‑1 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA < 1:2162960/50‑1 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > 1:3386916/1‑49 CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618942‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625680‑3625728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |