| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 158 [0] | [0] 160 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 156 (1.370) | 78/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 158 total aligned reads displayed.
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 2:1311005/50‑1ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 2:1504014/50‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA < 1:41729/49‑1 GTATTTCCGGTTCGATAATGCTTGGACCAACAGGGAGGGAATACGAGAA < 2:352936/49‑1 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:2690996/50‑1 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:1129411/50‑1 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:2214794/50‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 2:3827412/1‑50 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:674965/50‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:3791094/50‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCgc < 1:524219/49‑3 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 2:3085753/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 2:375988/1‑48 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA < 1:1408271/49‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA < 1:412242/49‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:4167233/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:1753061/49‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 2:2314986/50‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:4320840/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGACATCACAGGA > 1:3407850/1‑49 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAGCACAGGAC < 2:2070034/50‑1 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA < 2:565372/50‑1 TCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT > 2:1087466/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:1524304/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATAACAGGACAT < 1:1173721/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:2438795/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 2:1243339/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:558541/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 2:3255474/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:4063044/49‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 1:1786219/50‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 2:4209269/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:4001575/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 2:613883/1‑49 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:3413797/1‑49 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:2421173/1‑49 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:3627127/1‑49 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT > 2:196493/1‑49 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 1:1787948/1‑50 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:4247956/50‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:3598881/50‑1 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG > 2:3387027/1‑50 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG > 2:647588/1‑50 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG > 2:248508/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC < 2:3968188/50‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC < 2:83569/50‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 2:2443061/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 2:4344797/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 2:4547177/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 2:2021007/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 2:4271930/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:2919676/48‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 2:2320350/1‑49 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 2:1254669/1‑50 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 1:4510231/1‑50 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 2:1919785/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:3105614/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 2:247782/49‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:1028969/49‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCGGGTA < 2:4356953/49‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 2:172923/50‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC < 1:1378916/50‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 2:2166072/1‑49 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 2:3086552/1‑49 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCA < 1:2743504/50‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:1706007/50‑1 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTCCGCAA > 1:3666597/1‑49 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT < 2:2296893/50‑1 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 2:637204/1‑49 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:383600/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA > 2:1802910/1‑50 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 2:2664001/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:2575210/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:2256710/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:4440097/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:1124838/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:2314582/1‑49 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:4511366/1‑50 GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC < 2:2822153/50‑1 GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC < 2:3385524/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 1:2100377/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 2:3239123/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 2:1976231/1‑50 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 1:3230003/50‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:200919/1‑49 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGA < 2:4395742/50‑1 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGA < 2:3637585/50‑1 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:1011914/1‑49 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:3123255/50‑1 ACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG > 2:3133671/1‑50 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC < 1:2346963/50‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:4212218/1‑50 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG < 1:1500791/49‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG < 2:4424492/49‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 2:4217615/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:2574057/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 2:600130/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:4183216/1‑49 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA < 1:322881/50‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > 2:576523/1‑49 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |