| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 152 [0] | [0] 150 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 150 (1.290) | 73/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
Only 100 of 152 total aligned reads displayed.
GTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509512‑1509610 | gTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCt < 2:3218220/50‑1 (MQ=255) ttATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCt > 2:3485929/1‑49 (MQ=255) tATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa > 2:3582933‑M1/1‑48 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:1830031‑M1/1‑47 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:418772‑M1/1‑47 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaa < 2:1334278‑M1/49‑3 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaa < 2:2147177‑M1/49‑3 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:4461926‑M1/1‑46 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa < 2:1795639‑M1/49‑4 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaa < 2:143313‑M1/50‑7 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca > 1:1273012‑M1/1‑44 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTATaaaca < 1:1541397‑M1/49‑6 (MQ=255) cGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 2:3198464‑M1/50‑8 (MQ=255) cGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 2:3684977‑M1/50‑8 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 2:709479‑M1/1‑41 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 2:2053477‑M1/1‑41 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca < 1:3857507‑M1/50‑12 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca > 2:4521192‑M1/1‑39 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca > 1:3496063‑M1/1‑39 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaac < 1:3467433‑M1/49‑11 (MQ=255) ctctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac < 2:2656530‑M1/50‑13 (MQ=255) ctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca > 1:4480410‑M1/1‑36 (MQ=255) ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:4505010‑M1/48‑14 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacgccatt < 2:3872104‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:2635575‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 2:1854121‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:1932757‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:3634023‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:2294823‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 2:3715514‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccat < 1:3909528‑M1/48‑16 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca < 2:3040959‑M1/47‑15 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca < 1:2264974‑M1/47‑15 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 1:3823216‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg < 1:1258156‑M1/49‑18 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:825117‑M1/1‑31 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:4470704‑M1/1‑31 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg < 1:1107082‑M1/50‑20 (MQ=255) cccGCGCCGGAAGGGGGTTATATGGTTTCTaaacaaaatcaccattgcgc < 2:2663658‑M1/50‑21 (MQ=255) cccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:1583012‑M1/1‑30 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcag < 1:1676200‑M1/50‑23 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcag > 1:1581684‑M1/1‑28 (MQ=255) gcgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcagg > 1:2863541‑M1/1‑27 (MQ=255) gcgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcagg < 1:4004783‑M1/50‑24 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 1:2309159‑M1/1‑25 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 2:1077119‑M1/1‑25 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:71285‑M1/1‑24 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 2:1701108‑M1/1‑24 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 2:1361249‑M1/1‑24 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa < 2:3972128‑M1/50‑27 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 2:1259835‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 2:2512253‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:816080‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat < 2:76818‑M1/50‑28 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:1476492‑M1/1‑23 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 2:1108153‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:1059740‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 2:1964295‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 2:2947346‑M1/1‑22 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg > 1:306539‑M1/1‑21 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg > 1:1763559‑M1/1‑21 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt > 2:235803‑M1/1‑20 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg < 2:1239538‑M1/50‑32 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt < 1:298487‑M1/50‑35 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 2:890058‑M1/1‑16 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttta < 1:2851832‑M1/50‑36 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 1:1184613‑M1/1‑15 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 2:2254771‑M1/1‑14 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 1:103817‑M1/1‑14 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 2:2166122‑M1/1‑14 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa < 2:760688‑M1/50‑37 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 2:4292442‑M1/1‑14 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa < 1:2722045‑M1/50‑37 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 1:3207727‑M1/1‑14 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 1:70166‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 1:1523745‑M1/1‑13 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:2062234‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:3268638‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:3723317‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc < 2:2044013‑M1/49‑39 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt < 1:1044214‑M1/50‑41 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt < 1:1997120‑M1/50‑41 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:279744‑M1/1‑9 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 2:4166904‑M1/1‑9 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtc < 2:3314313‑M1/49‑42 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat > 2:2289669‑M1/1‑7 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat > 2:3092074‑M1/1‑7 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat > 1:2563591‑M1/1‑7 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 2:493387‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat < 1:1174897‑M1/49‑44 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattg < 1:459717‑M1/50‑46 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 2:3462838‑M1/1‑5 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 2:1724151‑M1/1‑5 (MQ=255) ttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 2:404979‑M1/1‑4 (MQ=255) ttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:4124681‑M1/1‑4 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:1546993‑M1/1‑3 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 2:2901955‑M1/1‑2 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 2:2436678‑M1/1‑2 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgagga > 1:4426781‑M1/1‑1 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgagga > 1:441717‑M1/1‑1 (MQ=255) | GTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509512‑1509610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |