| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 12,086 | 0 | C | T | 48.4% | 23.7 / 197.2 | 126 | intergenic (‑300/‑77) | yaaI/dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Reads supporting (aligned to +/- strand): ref base C (27/37); new base T (24/36); total (52/74) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 127 total aligned reads displayed.
TTTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGAT > NC_000913/12038‑12135 | tttAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCa < 1:4426296/50‑1 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAg < 2:3229599/49‑1 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGt > 1:2811039/1‑50 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGt > 2:484938/1‑50 (MQ=255) agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGt < 1:1845230/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg < 2:2499012/50‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg < 2:1779156/50‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGtt < 2:3218423/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGtt < 1:4190701/49‑1 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa < 1:1567888/50‑1 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa < 1:1170536/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGGAGTTGaaa < 2:1302270/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGaaa < 2:2046884/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGaaa < 1:4266677/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGaaa < 1:1415478/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGaa < 2:4192190/49‑1 (MQ=255) aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAcc < 1:2155161/49‑1 (MQ=255) ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGa > 1:437830/1‑50 (MQ=255) ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGa < 1:1800396/50‑1 (MQ=255) cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc < 2:448503/50‑1 (MQ=255) cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc < 2:805675/50‑1 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg < 2:3678457/50‑1 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg > 1:3736577/1‑50 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg > 2:2177096/1‑50 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg < 1:3751833/50‑1 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACg > 2:1332593/1‑50 (MQ=255) cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGt > 1:715046/1‑50 (MQ=255) cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGt > 2:1121072/1‑50 (MQ=255) cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGt > 2:2407294/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt > 2:3784469/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGtt > 1:2731161/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGtt > 1:3935891/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGtt < 1:1185283/50‑1 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt > 1:4156880/1‑50 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGttt > 2:745930/1‑50 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc < 2:4061101/50‑1 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc > 2:1486083/1‑50 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc < 1:1742388/50‑1 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc < 1:1561505/50‑1 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTc < 1:1468574/50‑1 (MQ=255) gagtgagtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCg > 2:1333941/1‑50 (MQ=255) gagtgagtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCg > 2:1239662/1‑50 (MQ=255) agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc < 2:4147542/50‑1 (MQ=255) agtgagtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGc > 1:2554867/1‑50 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc > 2:307047/1‑50 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGccc < 1:1559907/50‑1 (MQ=255) agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc > 1:809196/1‑49 (MQ=255) agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCt < 1:305652/50‑1 (MQ=255) agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCt < 2:3771619/50‑1 (MQ=255) agtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGcccc > 1:925100/1‑49 (MQ=255) gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa < 1:1512320/50‑1 (MQ=255) tCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTAt > 2:2968106/1‑50 (MQ=255) tGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:2455074/1‑50 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAtt < 2:44209/47‑1 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAtt < 2:4116612/47‑1 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:3230971/1‑48 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:4514068/1‑48 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTAc < 2:2563034/49‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTAtt < 1:1646907/47‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTAtt < 1:1334591/47‑1 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:791110/1‑48 (MQ=255) cAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTAc < 1:2031247/49‑1 (MQ=255) aaaaaaaTGAAATTGGGGAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:707818/1‑47 (MQ=255) aaaaaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:14028/1‑47 (MQ=255) aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc < 1:3315750/50‑1 (MQ=255) aaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 2:1967049/50‑1 (MQ=255) aaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 1:3787326/50‑1 (MQ=255) aaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 1:548930/50‑1 (MQ=255) aaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt < 2:1162943/50‑1 (MQ=255) aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACta < 2:1691090/50‑2 (MQ=255) aaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 2:3465275/1‑49 (MQ=255) aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 1:668507/1‑50 (MQ=255) aggAAATTGGGTAGTTGAAACCAGCCGTTTCCCCCCTATTACAGACTcac < 2:3450481/48‑1 (MQ=255) aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac < 1:3549470/50‑1 (MQ=255) aTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 2:1990250/1‑49 (MQ=255) tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 1:1154740/50‑1 (MQ=255) tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 1:112347/50‑1 (MQ=255) tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 2:3081016/50‑1 (MQ=255) tGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 1:2330697/50‑1 (MQ=255) tGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 1:4139432/50‑1 (MQ=255) tGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 2:1242810/50‑1 (MQ=255) aaaTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa < 2:2972562/49‑1 (MQ=255) aaaTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa < 2:2528640/49‑1 (MQ=255) aaaTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc < 1:1614740/50‑1 (MQ=255) aaaTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc < 2:1644203/50‑1 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:3951725/1‑49 (MQ=255) aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca > 1:3738251/1‑50 (MQ=255) aTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca < 2:1418133/50‑1 (MQ=255) aTTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca > 2:1021147/1‑50 (MQ=255) ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac < 2:17902/50‑1 (MQ=255) ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac < 2:2309242/50‑1 (MQ=255) ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca > 2:3698737/1‑49 (MQ=255) ttGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCGCAACcac < 2:1348607/50‑1 (MQ=255) gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat > 1:992902/1‑50 (MQ=255) ggCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat < 2:2743985/49‑1 (MQ=255) ggCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat > 2:3424700/1‑49 (MQ=255) ggCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACat < 2:3356276/49‑1 (MQ=255) gCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatga < 2:2629896/50‑1 (MQ=255) gCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatga < 2:813480/50‑1 (MQ=255) cAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatgat < 1:4012359/50‑1 (MQ=255) | TTTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGAT > NC_000913/12038‑12135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |