| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,090,282 | C→T | intergenic (+30/‑65) | yggI → / → endA | conserved protein YggI/DNA‑specific endonuclease I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,090,282 | 0 | C | T | 99.1% | 433.8 / NA | 112 | intergenic (+30/‑65) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (63/48); total (64/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 112 total aligned reads displayed.
CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT > NC_000913/3090235‑3090328 | cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg < 1:819682/50‑1 (MQ=255)cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCGGATTTg > 2:3159435/1‑50 (MQ=38) aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg < 1:1780345/50‑1 (MQ=255) aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg < 1:1355040/50‑1 (MQ=255) gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc > 2:612042/1‑50 (MQ=255) gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc > 1:1926768/1‑50 (MQ=255) gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc < 1:729086/50‑1 (MQ=255) cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt > 2:244385/1‑50 (MQ=255) cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt < 1:2669951/50‑1 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa < 1:3752973/49‑1 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt < 1:135438/50‑1 (MQ=255) gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt < 1:2464124/50‑1 (MQ=255) gTTGCGAAATAACCATCTGAACCATCAGGAACTTTCCTGATTTGGCTGAt > 2:1677998/1‑50 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt < 2:1005792/50‑1 (MQ=255) ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt < 2:4192130/50‑1 (MQ=255) gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg > 1:1496454/1‑49 (MQ=255) gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg < 1:1906952/49‑1 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc < 1:2235568/49‑1 (MQ=255) cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 1:4463564/1‑50 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 2:3750520/1‑49 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa > 1:1836753/1‑49 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt < 1:2344420/50‑1 (MQ=255) gAAATAACCATCTGAACTATCAGGAACTTTCCAGATCTGGCTGATTGCa > 2:4410549/1‑49 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa < 1:2544827/50‑1 (MQ=255) aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa > 2:2875639/1‑50 (MQ=255) aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc > 1:4526942/1‑50 (MQ=255) aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc > 2:1986763/1‑50 (MQ=255) aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc > 2:2019465/1‑50 (MQ=255) aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc < 1:988950/50‑1 (MQ=255) aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc > 2:3182446/1‑49 (MQ=255) tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa < 2:3334764/50‑1 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaa < 2:1421008/50‑1 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa < 2:4118931/49‑1 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa < 2:2435881/49‑1 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa < 2:3951472/49‑1 (MQ=255) aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa < 1:2773222/49‑1 (MQ=255) ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGTTTGCATACCaaa > 2:1989014/1‑49 (MQ=255) ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa < 2:1340753/50‑1 (MQ=255) ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa < 2:1813930/50‑1 (MQ=255) ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa > 2:1414541/1‑50 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa > 1:1528692/1‑49 (MQ=255) cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc < 2:1522886/50‑1 (MQ=255) aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACa < 1:3264775/50‑1 (MQ=255) tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg > 2:4430366/1‑50 (MQ=255) tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg > 1:153950/1‑50 (MQ=255) cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc > 2:480104/1‑50 (MQ=255) cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc > 2:570133/1‑50 (MQ=255) cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc > 1:2174365/1‑50 (MQ=255) tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt > 1:2081959/1‑50 (MQ=255) gAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt > 2:3674411/1‑50 (MQ=255) gAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt > 1:849803/1‑50 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt < 2:1024827/50‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt > 2:1092275/1‑50 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt > 1:3465631/1‑50 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt < 2:3681431/50‑1 (MQ=255) aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt > 1:1159867/1‑50 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc > 2:2463744/1‑50 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc > 2:2830425/1‑50 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc < 2:4358224/50‑1 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc < 1:4560110/50‑1 (MQ=255) aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc < 1:385121/50‑1 (MQ=255) aCTATAAGGATCTATCCTGATTTGGCTAATTGCATACCAAAACAGCttgc < 2:3991484/50‑3 (MQ=255) cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg > 1:3676616/1‑50 (MQ=255) tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAATCAGCTTTCGc > 2:3402158/1‑50 (MQ=255) tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 1:383685/1‑50 (MQ=255) aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 2:3300866/1‑49 (MQ=255) aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 2:2193414/1‑49 (MQ=255) aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 1:4213882/1‑49 (MQ=255) aTCAGGAACTTCCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc > 2:3363275/1‑49 (MQ=39) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc < 2:2010490/48‑1 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCt < 2:1510414/49‑1 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa < 1:2428957/50‑1 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa > 2:3370035/1‑50 (MQ=255) tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTATCGc < 2:1470149/48‑1 (MQ=39) cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc > 2:1328388/1‑50 (MQ=255) cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc > 1:1623382/1‑50 (MQ=255) cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc > 1:997073/1‑50 (MQ=255) aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg > 1:391418/1‑50 (MQ=255) ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt < 1:1927826/50‑1 (MQ=255) gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt > 1:1056871/1‑50 (MQ=255) gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt < 1:2321774/50‑1 (MQ=255) gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt > 2:1805416/1‑50 (MQ=255) gAACTTTCCTGATTTGGCTGATTGCATACCAAAACACCTTTCGCTACGtt > 1:1028682/1‑50 (MQ=255) aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg > 1:4309511/1‑50 (MQ=255) aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg < 2:220902/50‑1 (MQ=255) aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg < 2:223622/50‑1 (MQ=255) aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc < 2:575977/50‑1 (MQ=255) cTTTCCTGATTTGGCTGATTGCCTACCAAAACAGCTTCCGCTACGTTGCt > 2:2590533/1‑50 (MQ=255) cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt < 1:3833377/50‑1 (MQ=255) cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt < 2:3072644/50‑1 (MQ=255) tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg > 1:1739245/1‑50 (MQ=255) tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg > 1:1876683/1‑50 (MQ=255) ttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg > 2:1372987/1‑50 (MQ=255) tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc > 2:1818020/1‑50 (MQ=255) ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt > 2:2953345/1‑50 (MQ=255) cagATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc > 1:586740/3‑48 (MQ=39) cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt < 2:2242699/49‑1 (MQ=255) cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc > 1:2786107/1‑50 (MQ=255) cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc < 1:4184875/50‑1 (MQ=255) tGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg > 2:1473320/1‑50 (MQ=255) | CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT > NC_000913/3090235‑3090328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |