BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,400,314	Δ1 bp	coding (1460/1527 nt)	abgT ←	p‑aminobenzoyl glutamate:H(+) symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,400,314	0	A	.	100.0%	694.2 / NA	140	coding (1460/1527 nt)	abgT	p‑aminobenzoyl glutamate:H(+) symporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (58/82); total (58/82)

Only 100 of 140 total aligned reads displayed.

CCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400269‑1400353

cccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGcc                                   <  1:4410177/50‑1 (MQ=255)

cccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGcc                                   <  1:4263515/50‑1 (MQ=255)

cccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGcc                                   <  1:3002795/50‑1 (MQ=255)

cccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGcc                                   <  2:2567039/50‑1 (MQ=255)

 ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  2:3484564/1‑50 (MQ=255)

 ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  2:3003554/1‑50 (MQ=255)

  cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  1:3296343/1‑49 (MQ=38)

  cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  2:5198328/1‑49 (MQ=38)

  cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  2:5066806/1‑49 (MQ=38)

  cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt                                 <  1:1628939/50‑1 (MQ=255)

  cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt                                 <  1:3326725/50‑1 (MQ=255)

   ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  2:2321732/1‑50 (MQ=255)

   ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  2:2570984/1‑50 (MQ=255)

   ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  1:3142462/50‑1 (MQ=255)

   ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  2:2248355/1‑50 (MQ=255)

   ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  2:106708/1‑50 (MQ=255)

   ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  2:3381251/50‑1 (MQ=255)

   ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  2:721784/1‑50 (MQ=255)

   ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  2:4698832/50‑1 (MQ=255)

    gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               <  1:1154857/50‑1 (MQ=255)

    gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  2:5579412/1‑50 (MQ=255)

      ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  2:5622603‑M1/50‑3 (MQ=255)

       cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            >  2:4478983‑M1/1‑47 (MQ=255)

       cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            <  2:735539‑M1/50‑4 (MQ=255)

       cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            <  1:1847932‑M1/50‑4 (MQ=255)

        tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:5695016‑M1/1‑46 (MQ=255)

         aTCGGCAGACCGACAAGATACCACGCCAGC‑CCATC‑GCAGCCATACtatg                           >  2:5253629‑M1/1‑45 (MQ=255)

         aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:4758394‑M1/1‑45 (MQ=255)

          tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc                          <  1:4968465‑M1/49‑6 (MQ=255)

          tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:3222383‑M1/1‑44 (MQ=255)

          tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           <  1:1722366‑M1/48‑5 (MQ=255)

           cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:768150‑M1/1‑43 (MQ=255)

            ggCAGACCGACAAGATTCCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        <  2:826083‑M1/49‑8 (MQ=255)

            ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        <  1:1223719‑M1/49‑8 (MQ=255)

             gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa                      <  1:5508557‑M1/50‑10 (MQ=255)

             gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       >  1:4047875‑M1/1‑41 (MQ=255)

             gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       >  2:1952770‑M1/1‑41 (MQ=255)

             gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       >  2:59535‑M1/1‑41 (MQ=255)

              cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     <  1:1893102‑M1/50‑11 (MQ=255)

              cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     <  1:5316211‑M1/50‑11 (MQ=255)

               aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                    <  1:376103‑M1/50‑12 (MQ=255)

               aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:2426182‑M1/1‑39 (MQ=255)

               aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  2:4631120‑M1/1‑39 (MQ=255)

                gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca                   <  1:4117980‑M1/50‑13 (MQ=255)

                gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                    >  1:3181599‑M1/1‑38 (MQ=255)

                 aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  >  2:5683845‑M1/1‑37 (MQ=255)

                 aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  >  1:5493103‑M1/1‑37 (MQ=255)

                 aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  >  2:4056259‑M1/1‑37 (MQ=255)

                  ccGACAAGATACCTCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 <  2:5088848‑M1/50‑15 (MQ=255)

                   cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:1107489‑M1/1‑35 (MQ=255)

                   cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:2402678‑M1/50‑16 (MQ=255)

                   cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:4079403‑M1/50‑16 (MQ=255)

                   cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:2266401‑M1/1‑35 (MQ=255)

                   cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:3659610‑M1/50‑16 (MQ=255)

                    gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  2:45990‑M1/1‑34 (MQ=255)

                    gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  2:3978432‑M1/1‑34 (MQ=255)

                    gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               <  1:585494‑M1/50‑17 (MQ=255)

                    gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               <  2:1275958‑M1/50‑17 (MQ=255)

                     aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:3574601‑M1/50‑18 (MQ=255)

                     aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:258693‑M1/50‑18 (MQ=255)

                     aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              >  2:3528288‑M1/1‑33 (MQ=255)

                     aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  2:2853022‑M1/50‑18 (MQ=255)

                     aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              >  1:1943019‑M1/1‑33 (MQ=255)

                     aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:604097‑M1/50‑18 (MQ=255)

                      cAAGATACCACGCCAGC‑GCATC‑GCAGCCATACtatgcagaaacaatgctg             <  2:5578746‑M1/50‑19 (MQ=255)

                      cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             >  1:4057908‑M1/1‑32 (MQ=255)

                      cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             >  1:2576239‑M1/1‑32 (MQ=255)

                      cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             <  1:1283221‑M1/50‑19 (MQ=255)

                      cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             <  1:2705008‑M1/50‑19 (MQ=255)

                      cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             <  2:4293105‑M1/50‑19 (MQ=255)

                       aaGATACTACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  2:3345200‑M1/1‑31 (MQ=255)

                       aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  2:1414590‑M1/1‑31 (MQ=255)

                       aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  2:4981815‑M1/1‑31 (MQ=255)

                       aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            <  1:273046‑M1/50‑20 (MQ=255)

                        aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  2:1557066‑M1/1‑30 (MQ=255)

                        aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  2:3011683‑M1/1‑30 (MQ=255)

                        aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  2:3338553‑M1/50‑21 (MQ=255)

                         gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg          <  1:1076157‑M1/50‑22 (MQ=255)

                         gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  1:1095006‑M1/1‑29 (MQ=255)

                         gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  2:5702859‑M1/1‑29 (MQ=255)

                          aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         <  1:281729‑M1/50‑23 (MQ=255)

                           tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:2141555‑M1/50‑24 (MQ=255)

                           tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        >  1:2096944‑M1/1‑27 (MQ=255)

                           tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:1653884‑M1/50‑24 (MQ=255)

                           tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        >  1:5379837‑M1/1‑27 (MQ=255)

                             ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg      <  1:5767370‑M1/50‑26 (MQ=255)

                             ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg      <  1:4363196‑M1/50‑26 (MQ=255)

                             ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg       <  1:3606452‑M1/49‑25 (MQ=255)

                              cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     <  2:4984807‑M1/50‑27 (MQ=255)

                              cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     <  1:3072973‑M1/50‑27 (MQ=255)

                              cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     <  1:130644‑M1/50‑27 (MQ=255)

                               aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  2:3848798‑M1/50‑28 (MQ=255)

                               aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    >  2:3154753‑M1/1‑23 (MQ=255)

                               aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  2:310832‑M1/50‑28 (MQ=255)

                               aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  1:3853453‑M1/50‑28 (MQ=255)

                               aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  1:4436480‑M1/50‑28 (MQ=255)

                                 gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  >  2:894655‑M1/1‑21 (MQ=255)

                                 gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  >  2:5329329‑M1/1‑21 (MQ=255)

                                 gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  <  1:5692305‑M1/50‑30 (MQ=255)

                                 gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  <  1:434366‑M1/50‑30 (MQ=255)

CCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400269‑1400353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`